Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01962 ATGCCTACCATGATAGCCACTTTCGGATTTTGCTCATTTTTTCCACCTTTCATTGATCCATTCATTATTTTCGATTCTGCTACAGCTCGATGGGAGACGTGGCAAAGGACCTTACAGCTGGAACTGCAGACAATAGCAGCCGAAGGTCCAAGGGGTTTATACAAAGGTATGGGAGCCCCACTCGCTACGGTTGCAGCCTTCAATGCTCTCCTATTTACAGTTAGGGGACAAATGGAATCATTAGTGAGGTCCCATCCTGGTGCTCCCCTCACTGTGAATCAGCAGTTTGTTTGCGGAGCTGGAGCTGGTGTTGCTGTTTCCTTTCTTGCTTGCCCAACTGAATTAATCAAATGCAGGCCTGTAACACTCGCCCTGGCGAGTCAGAAACTCGCCTGGCGAGTTATACAGGCACCAACACTTGCCACGGCGAGTTATCACTTGAATGTTGAGTACAAGAAGACTGAAATTTTCGGGCTTGAGATCCCTACTGAAGTGGAAGGAGTCCCCTCCGAAATTCTGGACCCCGAGAACACGTGGTCAGATAAAACAGCATACAAAGAGACATTGTTGAAGCTGGCTGGATTGTTCAAGAAGAATTTCGAAACCTTCACTGACTATAAGATTGGTGAAGACAGCAAATTGACAGAAGATATTCTTGCAGCTGGTCCAATCTTTTGA 678 0.4661 MPTMIATFGFCSFFPPFIDPFIIFDSATARWETWQRTLQLELQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMESLVRSHPGAPLTVNQQFVCGAGAGVAVSFLACPTELIKCRPVTLALASQKLAWRVIQAPTLATASYHLNVEYKKTEIFGLEIPTEVEGVPSEILDPENTWSDKTAYKETLLKLAGLFKKNFETFTDYKIGEDSKLTEDILAAGPIF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01962 225 SUPERFAMILY Mitochondrial carrier 36 125 IPR023395 -
Trre15g01962 225 Gene3D - 137 224 IPR013035 GO:0004611|GO:0006094|GO:0017076
Trre15g01962 225 PANTHER PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP 147 225 IPR001272 GO:0004612|GO:0005524|GO:0006094
Trre15g01962 225 SUPERFAMILY PEP carboxykinase-like 148 224 - -
Trre15g01962 225 Gene3D Mitochondrial carrier domain 24 136 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01962 Trre-Chr15 15832456 15836811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01962 43 124 Antiporters AT1G79900 36.559 8.09e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01962 K15109 - cit:102628303 148.673