Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01955 ATGTCTCCACCACTGCTGGTTCCTGAAGAGGAACGGCAGAGCAACACCTCAACGGTAGCATCTGCATCTCCACAAACCTTGGACTGTTTTTCCCAAACTGGAGTTGGATTGAAAGAACGCAATTACCTCGGATTGTCGGATTGCTCATCGGTAGACAGTTCTACTGTCCCGAGCTTGTCTGATGAGAAAAAAGTAAACCTAAACTTGAAAGCTACAGAGTTAAGGCTGGGACTTCCTGGATCCCAGTCGCCTGAAAGGGATCCAGATCTTTTTACATTGAGCTCGACAAAACTTGACGAGAAACCACTTTTTCCTTTGCTTCCCACGAAAGATGGAATCTGCTCATTGTCCCAGAAGAATGTGGTTTCAGGCAACAAAAGAGGTTTCGCTGACACAATAGATGTGTTCCCTGAGGCGAAATATAATGGTAATGCGCGTGTAAACATACTTCTATCGCCAAGACCTTCTGGAGCTCAGCCTACTACAGTTAAAGAAAAACCAAGCAAGGTGTTACAAGAGAGCCCTTGTGCAGCAAATGGAACTGGAGCTCCTATCAGTGGCAGTGCACCGGCTGCTAAAGCACAAGTTGTCGGTTGGCCACCTATTAGATCATTTAGGAAAAACTCATTGGCCAATGCTTCGAAGAACAACGATGAAGTGGATGGAAAACCAGGTCCGGCTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATCTTAGGAAGGTAGATCTAAGAAACTATACAACATACCAGGAACTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCGCATGGAGCTCCGGGAAGAGAAATGTTGAGCGAGAGCAAGTTGAAGGACTTCCTGCATGGTTCTGAATACGTGGTCACTTATGAAGATAAAGATGGCGACTGGATGCTTGTCGGAGATGTACCATGGGATATGTTCACTGACACATGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGAGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1047 0.4575 MSPPLLVPEEERQSNTSTVASASPQTLDCFSQTGVGLKERNYLGLSDCSSVDSSTVPSLSDEKKVNLNLKATELRLGLPGSQSPERDPDLFTLSSTKLDEKPLFPLLPTKDGICSLSQKNVVSGNKRGFADTIDVFPEAKYNGNARVNILLSPRPSGAQPTTVKEKPSKVLQESPCAANGTGAPISGSAPAAKAQVVGWPPIRSFRKNSLANASKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01955 348 MobiDBLite consensus disorder prediction 154 168 - -
Trre15g01955 348 FunFam Auxin-responsive protein 223 340 - -
Trre15g01955 348 MobiDBLite consensus disorder prediction 9 25 - -
Trre15g01955 348 Pfam AUX/IAA family 72 339 IPR033389 -
Trre15g01955 348 Gene3D - 225 342 - -
Trre15g01955 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Trre15g01955 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 335 IPR003311 GO:0005634|GO:0006355
Trre15g01955 348 SUPERFAMILY CAD & PB1 domains 226 329 - -
Trre15g01955 348 MobiDBLite consensus disorder prediction 151 176 - -
Trre15g01955 348 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01955 Trre-Chr15 15769979 15772761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01955 232 338 B3 DNA Binding Superfamily AT4G23980 30.841 2.82e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre15g01955 AUX_IAA 3.8e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01955 K14484 - gmx:100500373 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01927 9 18778679 18782333 Trre15g01955 15 15769979 15772761 PCT