Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01949 ATGTCTCCTAGTTTCTATACCCTTCCCCTCTTCTTTTTGTCCTTAATGTTCTTCACATTCCCTTGTAATTCAATACACTTCCAATTTTCCCGTTTTATTGCAAGTGATCCCAACATAATCTACCAAGGTTCTGCAGCACCAATTGATGGAAAAGTTGATTTCAACATCAATAAAGAATATAACTGTCAAGTTGGAAGGGCAATCTATGCCAAAAGGGTTTTACTTTGGGACTCAAAAACAAGACAACTCCCTGATTTCACAACTCATTTCACCTTCATTATTGACACTCCAACAAATAAAGATCATATACCTGGTGATGGATTTGCCTTCTTCCTTGGTCCTTTTGGAATTGACATCCCACCGAATTCTTCGGGTTCTTTTTTGGGCTTATTTAACTTAACAACAAGGAATTCTACTGATAATCATATTGTTCATGTGGAGTTTGATACTTTCTCGAATTATGATCGAGGTGAGAGAGGACAACACGTAGGAATCAACGAAAACTTTGAGTTTTCGTCAATTGTAACACCATGGAATGCTAAACTACACAGTAAAGACACTGCTGATGTATGGATTAGCTACAATTCTACCACCACAAATTTAACTGCATCATGGAAATATCAAAATACCTATAATCCTCAAGAAAAAACCAGTCTTTCATATCAAATTGATTTAATGAAGGTTTTACCTGAATGGGTTACCGTAGGATTTTCTGCTTCAATAGGTGCCATTGGAGAAAAGCACACCCTTCTATCTTGGGAATTCAGCTCAAGTTCGGATCAAAGTTATGATGACGACGATGATACAAAAAAAATAAGATTAGTTGTGATAGTAACAGTCTCTTGTGGGGTTGTAGCATTGGGAGCACTAACAATATTTGCATTACTTTTGATGAAAAGAAAGAGAAGTAGAAAGCAAAAGGAAGAGGCTATGCACTTAAGATCAATCAATCATGATCTTGAAAGAGGAGCAGGACCGAGAAACTTTACCTACGAAGAACTTGATTTCGCTACGCATAATTTCTCTAGTGATAGAAAGTTGGGTCAAGGTGGATTCGGAGCTGTTTATAAAGGTTACTTTTTTGATATAGATTTATCGGTTGCTGTGAAGAAAATATCGAGAGGATCAAGACAAGGTAAGAAAGAGTATGTGACTGAAGTTAAAGTCATTAGTCAACTAAGACATAAGAATCTTGTGAAGCTTTTAGGTTGGTGTCATGAAAAAGGTGATTTTCTACTTGTTTATGAGTTTATGCCAAATGGTAGTCTTGATTCTCATTTATTTGGTAAAAGAACACCTCTTTCTTGGAGTGTAAGGCACAAGATAGCACTTGGATTGGTCTCTTGTTTGCTTTATCTACATGAAGAATGGGAGAGATGTGTGGTTCATAGAGATATAAAATCAAGTAATATTATGCTTGATTCTAGTTTCAATGTTAAGCTTGGTGACTTTGGGTTGGCTAAGCTAATGGACCACGAGATTGGGCCCCAAACAACCGTCGTTGCCGGAACCTTAGGCTATATGGCTCCAGAATATATAAGCACAGGTAAGGCTAGGAAAGAGTCAGATGTATATAGTTTTGGGGTTGTTGCCTTGGAGATTACAACTGGAAGGAAAGTTGTTGAAGTTATGAGTGACAAAGATGGAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAGGAGAGTTACTTAAGGCAATGGATGACAATTTGAAAAAGGATTATGATGAGAAAGAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCGTCGATTAGACAAGCAATTCAAGTGCTTAATTTTGAGGCTGGCCTTCCAAATCTTCCACCAAAGAAGCCTGTTGCAACCTATCACGCTCCTCCACCGGTTGTAAGCTCGGTTGGAGTTTCCATAACCACAAGCCTTCAAGATGGTCGTTAA 1956 0.3793 MSPSFYTLPLFFLSLMFFTFPCNSIHFQFSRFIASDPNIIYQGSAAPIDGKVDFNINKEYNCQVGRAIYAKRVLLWDSKTRQLPDFTTHFTFIIDTPTNKDHIPGDGFAFFLGPFGIDIPPNSSGSFLGLFNLTTRNSTDNHIVHVEFDTFSNYDRGERGQHVGINENFEFSSIVTPWNAKLHSKDTADVWISYNSTTTNLTASWKYQNTYNPQEKTSLSYQIDLMKVLPEWVTVGFSASIGAIGEKHTLLSWEFSSSSDQSYDDDDDTKKIRLVVIVTVSCGVVALGALTIFALLLMKRKRSRKQKEEAMHLRSINHDLERGAGPRNFTYEELDFATHNFSSDRKLGQGGFGAVYKGYFFDIDLSVAVKKISRGSRQGKKEYVTEVKVISQLRHKNLVKLLGWCHEKGDFLLVYEFMPNGSLDSHLFGKRTPLSWSVRHKIALGLVSCLLYLHEEWERCVVHRDIKSSNIMLDSSFNVKLGDFGLAKLMDHEIGPQTTVVAGTLGYMAPEYISTGKARKESDVYSFGVVALEITTGRKVVEVMSDKDGEKGMIEWVWDHYGRGELLKAMDDNLKKDYDEKEVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEAGLPNLPPKKPVATYHAPPPVVSSVGVSITTSLQDGR 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01949 651 Gene3D - 22 273 - -
Trre15g01949 651 ProSitePatterns Protein kinases ATP-binding region signature. 347 371 IPR017441 GO:0005524
Trre15g01949 651 PANTHER - 55 615 - -
Trre15g01949 651 Pfam Legume lectin domain 25 266 IPR001220 GO:0030246
Trre15g01949 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Trre15g01949 651 Gene3D Transferase(Phosphotransferase) domain 1 418 632 - -
Trre15g01949 651 FunFam Lectin-domain containing receptor kinase A4.3 418 631 - -
Trre15g01949 651 CDD lectin_legume_LecRK_Arcelin_ConA 25 255 IPR001220 GO:0030246
Trre15g01949 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 261 IPR013320 -
Trre15g01949 651 CDD STKc_IRAK 347 612 - -
Trre15g01949 651 Pfam Protein kinase domain 342 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01949 651 ProSitePatterns Legume lectins alpha-chain signature. 229 238 IPR000985 -
Trre15g01949 651 Gene3D Phosphorylase Kinase; domain 1 326 417 - -
Trre15g01949 651 FunFam L-type lectin-domain containing receptor kinase IX.1 326 417 - -
Trre15g01949 651 ProSiteProfiles Protein kinase domain profile. 341 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01949 651 SUPERFAMILY Protein kinase-like (PK-like) 325 630 IPR011009 -
Trre15g01949 651 SMART serkin_6 341 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01949 Trre-Chr15 15712217 15714172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01949 10 630 Receptor kinase-like Gene Family AT5G10530 56.480 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre15g01949 Pkinase 8.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01949 - - cave:132172535 782.326