Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01946 ATGAAACGCCGAATGTTAGCTAGGGATTTGGCAGCATCAAATTGGGGAAAAGTGGCGTGGTATTATCTGGTGTCATCATCAATTTTTGGTTTAACCTTCACTGATATTGCTGAAATATGTGCTCATGATTATGAGTATTTGGTTGATGTAATTGGGGTTATGACTGGTCAATTAACTGATTTCACAACTCATTACACTTTTATCATAAACACTCAAAATAAATCTTTATATGGTCATGGCCTTGCATTTTTCTTGGCTCCTTTTGGATTTGACATCCCACCAAATTCTTCTGGTGGCTTGATGGGGCTATTTAACACCACAACAATGGATTCATCTTCTAGCAATCAAATTGTTCATGTGGAATTTGATTCTTACCCAAATGATGAATGGGGTGAGACAAACCAACATGTTGGAATCAACAATAATTCAATCATTTCATCGATATCAACACCTTGGAATGCAAGTTACCATAGCGGAGACACTGTCGAGGTAAGTATTAGCTACAATTCTACAACCAAAAATTTGACTGTATCTTGGAAATATCAAACCACAAATAATCCACAAGAGAGTACTAGTCTTTCATATCAAATTGATTTGATAAAAATTCTACCCGAATGGATTACTGTTGGATTTTCTGCTGCAACTGGTACATTTGGAGAATTAAATAATCTTTTGTCATGGGAATTTAATTCCACGTTGGACAAAAGTGATAATAGTAATTCAAAAGAGACAAGATTGATTCTGATAGTGACAGTTTCTTGTGGAGTTCTGATATTAGGAGTGGTAGCATTTGTAGCATATGTAATACTAAAGAAGAAAAGAAAGAGAAATGAAAAGCAAAGGGAAGAGGCTATGCATTTAACTTCAATGAATGATGACCTTGAAAGAGGAGCAGGTCCAAGAAGATTTACCTACAAAGAACTTGATTTGGCAACCAATAACTTCTCTAAGGATAGAAAATTAGGTCAAGGTGGTTTTGGAGCTGTTTTTAAAGGTTACTTTGTTGATTTAGATTTACAAGTTGCTGTGAAGAAAATATCAAGAGGATCAAGACAAGGGAAGAAAGAGTATGTAACTGAAGTTAAAGTAATTAGTCAACTAAGACATAGGAATCTTGTGAAGCTATTAGGTTGGTGTCATGATAAAGCTAAATTAATGGATCACGAACTCGGGCCGCAAACAACTGGGCTAGCCGGAACATTCGGATATCTAGCTCCGGAATATGTGAGTACAGGAAGGGCTAGTAAAGAGTCAGATGTGTATAGTTTTGGGATCGTTGTCATGGAGATAACAACCGGAAAGAAAGCGACCGAAGTTATAAAAGAAAAAGATGAAGAGAAGGGAATGATTGAGTGGGTTTGGGATCATTATGGAAGAAGAGAGTTACTTATGGCCATGGATGAGAGTTTGAAAAGGGATTATGATGAGAAACAAGTAGAGTGTTTGATGATTGTTGGATTATGGTGTGCTCATCCTGATGTAAATCTTAGACCATCGATTCGACAAGCGATTCAAGTGCTTAATTTTGAAGTTTCTTTGCCAAATCTTCCACCAAAGAGACCTGTTGCAACTTATCATGCTCCTCCTACACCTTCTGTAAGTTCAGTTGAAGCTTCCATAACCAATAGTCTTCAAGATGGTCGTTAA 1647 0.3673 MKRRMLARDLAASNWGKVAWYYLVSSSIFGLTFTDIAEICAHDYEYLVDVIGVMTGQLTDFTTHYTFIINTQNKSLYGHGLAFFLAPFGFDIPPNSSGGLMGLFNTTTMDSSSSNQIVHVEFDSYPNDEWGETNQHVGINNNSIISSISTPWNASYHSGDTVEVSISYNSTTKNLTVSWKYQTTNNPQESTSLSYQIDLIKILPEWITVGFSAATGTFGELNNLLSWEFNSTLDKSDNSNSKETRLILIVTVSCGVLILGVVAFVAYVILKKKRKRNEKQREEAMHLTSMNDDLERGAGPRRFTYKELDLATNNFSKDRKLGQGGFGAVFKGYFVDLDLQVAVKKISRGSRQGKKEYVTEVKVISQLRHRNLVKLLGWCHDKAKLMDHELGPQTTGLAGTFGYLAPEYVSTGRASKESDVYSFGIVVMEITTGKKATEVIKEKDEEKGMIEWVWDHYGRRELLMAMDESLKRDYDEKQVECLMIVGLWCAHPDVNLRPSIRQAIQVLNFEVSLPNLPPKRPVATYHAPPTPSVSSVEASITNSLQDGR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01946 548 Gene3D Transferase(Phosphotransferase) domain 1 385 515 - -
Trre15g01946 548 MobiDBLite consensus disorder prediction 528 548 - -
Trre15g01946 548 ProSitePatterns Protein kinases ATP-binding region signature. 321 345 IPR017441 GO:0005524
Trre15g01946 548 MobiDBLite consensus disorder prediction 522 548 - -
Trre15g01946 548 Pfam Legume lectin domain 55 242 IPR001220 GO:0030246
Trre15g01946 548 Coils Coil 270 290 - -
Trre15g01946 548 CDD lectin_legume_LecRK_Arcelin_ConA 55 233 IPR001220 GO:0030246
Trre15g01946 548 Pfam Protein kinase domain 315 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01946 548 Pfam Protein kinase domain 393 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01946 548 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 247 IPR013320 -
Trre15g01946 548 FunFam Lectin-domain containing receptor kinase A4.3 380 527 - -
Trre15g01946 548 Gene3D - 44 256 - -
Trre15g01946 548 PANTHER - 60 381 - -
Trre15g01946 548 SUPERFAMILY Protein kinase-like (PK-like) 299 528 IPR011009 -
Trre15g01946 548 ProSiteProfiles Protein kinase domain profile. 315 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01946 548 Gene3D Phosphorylase Kinase; domain 1 300 384 - -
Trre15g01946 548 FunFam L-type lectin-domain containing receptor kinase IX.1 300 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01946 Trre-Chr15 15698304 15704471 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01946 55 526 Receptor kinase-like Gene Family AT5G10530 45.324 9.12e-152 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre15g01946 Lectin_legB 7.7e-53 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01946 - - cave:132172487 547.354