Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01938 ATGGCTATCTTCACATATTCTTCACACTATAATCAAACCAAAAACACCTTTTCTATGTTAATCATAATTTTTACTTTGTTCTATGCACTTTTTAACCCTGCATACTCAATTTCCTTCAACTTCTCTACCTTCCCATCAAACTTATATCAAATAAAATTCCAAGGTGATGCATTTTCATCAAACAATGTTCTTCAGCTTACAAAAAACCAACTCGACGGCCCAATAACAAGCAGCGTCGGTCGTGCTTCATTCGACCAACCGGTGAAGCTTTACGACAAAAAAACAAAAGAGTTAACTGATTTCACAACACATTTCTCCTTTAAAATGAAAGCCGTTAATTCTTCGCAGTCAGGTGATGGTTTATCGTTTTTCATCGCTCCTTTTCAATCTGATATCCCGATAAACTCCTCCGGTGGTTACCTCGGTTTATTCAGCGAGGACACTGCATTAAACACAAGTAAAAACCAAATAGTAGCCGTTGAGTTTGATAGTTTTTCGAATGATTGGGATCCACAACTTGATCATGTTGGAATCAATGTTAATTCGATTCGTTCGGTTCAAAATGTTTCTTGGACGAGTAACATCATGAAAAACGGTTCGATTGCGAATGCTTGGATTTCGTATAACTCAACAACAAAAAACCTTACTGTTTTTCTTACATATTCCAAAAATCCAACTTTTCAAGGAAACTCTAGTCTTTCACATGTTATTGATTTGAGTGAAATTTTTCCTGAATATGTTAGGATTGGTTTTTCAGCTGCAACAGGTCAATGGATTGAAATACACAACATTCTATCTTGGTCATTCAATTCAACTATGGAAAATGGTAATGGCAAAAAAACTAGCAAGGTTGTTTTAGGTGTTGGTTTAAGTGTTGGTTTTGGTTTTTTAACATGTTTTGTAGGTTTGTTATGGTTCATTTTTTGGAGAAAAAGAAAAGGGTTATATAGGGGTAAAATGGACAATAATAGAGATATTGATGGTTCAATAGATGAAGCTGAATTTGAGAGAGGAACTGGTCCAAAAAAATTCACTTACAAAGTACTAAGCAATGCAACAAATGGTTTTGAAGAAAAAGGTAAACTTGGTGAAGGTGGATTTGGAGGTGTTTATAAGGGTATAATTGGAAAAACTAACAAAAAAATGGAAGTAGCTGTGAAAAGGGTTTCAAAAGGTTCAAGACAAGGTAAAAAAGAATATATATCTGAAGTAAGAATAATAAGTAAATTAAGACATAGAAATTTGGTTCAATTATTAGGTTGGTGTCATGAAAAAAATGAGTTATTACTTGTTTATGAATATATGCCTAATGGAAGTCTTGATTTTCATTTATTTGGAAAAGGGATTATGTTAAGTTGGAATTTAAGGTACAAAATTGCATTAGGCTTAGCATCATCACTTCTTTATTTACATGAAGAGTGGGAACAATGTGTGGTACATAGAGATATTAAATCAAGTAATGTTATGTTAGATGCAAATTTTAATTCAAAGTTAGGTGATTTTGGTCTTGCAAGATTAGTAGATCATGAACTTGGTTCACAAACAACTGTTTTAGCTGGTACAATGGGATATTTAGCACCTGAATGTGTTACAACTGGAAAATCAAGTAAAGAATCTGATGTATATAGTTTTGGTGTTGTTGCACTTGAAATTGTATGTGGTAGAAGATCAATTGAACCAAAAGAAGAAGCTAAGAAAGTTAGGCTTGTGGAATGGGTTTGGGAGTTATATGGTAAAAGTGAATTATTTGAAGGTGTTGATAAAGGGTTAAATTTGGAATATGATGAAAAGCAAATGGAGTATTTAATGATTATTGGATTATGGTGTTGTCATCCTGATTTTACTATGAGGCCTTCTATTAGACAAGTGATTAATGTTTTGAATTTTGAAGCAAATTTGCCTAATCTTCCTTCAAAATTGCCTGTGCCTATGTATTTTGCACCTCCTATGGAGATGTGTAGATTTTCTTATACTTTTGATGGTATTACAAATACTACTAAAGGTTCATCTACTTATTCATCATTGTCAGCTGGGTCTAGAAAATCTCTATTGTAG 2055 0.3309 MAIFTYSSHYNQTKNTFSMLIIIFTLFYALFNPAYSISFNFSTFPSNLYQIKFQGDAFSSNNVLQLTKNQLDGPITSSVGRASFDQPVKLYDKKTKELTDFTTHFSFKMKAVNSSQSGDGLSFFIAPFQSDIPINSSGGYLGLFSEDTALNTSKNQIVAVEFDSFSNDWDPQLDHVGINVNSIRSVQNVSWTSNIMKNGSIANAWISYNSTTKNLTVFLTYSKNPTFQGNSSLSHVIDLSEIFPEYVRIGFSAATGQWIEIHNILSWSFNSTMENGNGKKTSKVVLGVGLSVGFGFLTCFVGLLWFIFWRKRKGLYRGKMDNNRDIDGSIDEAEFERGTGPKKFTYKVLSNATNGFEEKGKLGEGGFGGVYKGIIGKTNKKMEVAVKRVSKGSRQGKKEYISEVRIISKLRHRNLVQLLGWCHEKNELLLVYEYMPNGSLDFHLFGKGIMLSWNLRYKIALGLASSLLYLHEEWEQCVVHRDIKSSNVMLDANFNSKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEIVCGRRSIEPKEEAKKVRLVEWVWELYGKSELFEGVDKGLNLEYDEKQMEYLMIIGLWCCHPDFTMRPSIRQVINVLNFEANLPNLPSKLPVPMYFAPPMEMCRFSYTFDGITNTTKGSSTYSSLSAGSRKSLL 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01938 684 Gene3D Transferase(Phosphotransferase) domain 1 435 648 - -
Trre15g01938 684 PANTHER - 53 637 - -
Trre15g01938 684 ProSitePatterns Legume lectins beta-chain signature. 158 164 IPR019825 -
Trre15g01938 684 Gene3D Phosphorylase Kinase; domain 1 341 434 - -
Trre15g01938 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Trre15g01938 684 CDD lectin_legume_LecRK_Arcelin_ConA 37 273 IPR001220 GO:0030246
Trre15g01938 684 ProSitePatterns Protein kinases ATP-binding region signature. 362 387 IPR017441 GO:0005524
Trre15g01938 684 Pfam Legume lectin domain 37 282 IPR001220 GO:0030246
Trre15g01938 684 FunFam Lectin-domain containing receptor kinase A4.3 435 647 - -
Trre15g01938 684 FunFam L-type lectin-domain containing receptor kinase IX.1 341 434 - -
Trre15g01938 684 SMART serkin_6 356 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01938 684 FunFam L-type lectin-domain containing receptor kinase IX.1 35 282 - -
Trre15g01938 684 Gene3D - 35 288 - -
Trre15g01938 684 SUPERFAMILY Protein kinase-like (PK-like) 340 651 IPR011009 -
Trre15g01938 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 274 IPR013320 -
Trre15g01938 684 Pfam Protein kinase domain 356 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01938 684 ProSiteProfiles Protein kinase domain profile. 356 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01938 Trre-Chr15 15674717 15676771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01938 18 645 Receptor kinase-like Gene Family AT5G10530 50.078 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre15g01938 Pkinase 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01938 - - gmx:100777201 967.992