Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01937 ATGTTGTTTTGGTGGCTTGGAATGATTGTGCAACTTTGTTTCTTGCTATGTGGTTGTTCTGAGAAAACATCATTAAGAGGAAGTTCAAAGATTATTAATGGCATTGGATTATCATCTAAAGTCAAGCTGAATACAGAAGAAGACCAACAGCAGTTGGTTGTTGACAATGGCATTGTTTCTGTGACATTATCAAGACCCGAGGGTTACATCCTTGGAATATCGTATAATGGAATTGACAACATTCTTGAATCTAAAAACGAACAAGTAGATAGAGGGTACTTCGACGTTACTTGGAATGAACCGGGAAAGGAAGGTGAAACCCAAAGAATCCATGGGACAAATTTTTCAGTCATAGCAGCTGATGAGAATATGGTGGAGCTTTCATTTTCAAAATCATGGACATCTTCCATGATGGGTACAGATGTCCCTATAAACATAGACAAAAGATACATTTTCAGAAGTGGTGATTCTGGATTTTATTCATACGTAATATTTGATCGCCCTGAAGGAATGCCAGCAATTGAGGTTGATCAAATTAGATATGTTTACAAACTCGATGAAGACAGATTCAAGTACATGGCATTATCTGATACAAGACAAAGAAGCATGCCATCAATGAATGATAGAATAACAGGCCAAATCCTAGCTTACAAAGAAGCAGTTCTATTAACTAAACCAAGTAACCCACAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAAAACACAGATAACACTGTTCATGGATGGATTAGTTTTGATTCTGATGCACCCATTGGATTTTGGATGATAACACCAAGTAATGAGTTTCGTAATGGTGGACCCACTAAGCAAGATCTTACTTCTCATGTTGGGCCCTACACACTCTCTATGTTTGTGAGCACCCACTATGCTGGTAAGGAAGTAACCATGGCATTTCAAGATGGAGAGACTTATAAAAAAGTTTTTGGTCCTGTATTTGTCTACCTTAACACTGATTCAAAAGAGAATGATAAACTATCTCTCTGGACAGATGCTGTACAACAGTCATCCAAGGAAGTCCAAAGTTGGCCTTATGATTTTCTTCAATCACAAGATTACTTTCCACCTAATCAAAGGGGAGCAGTATTTGGAAGATTATTAGTCCAAGATAGGTATCTCCAAGGAGGAAAATTTCAATGTACTAATGCTTATTTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTCGAGCTGATGCCAAAGGATACTTTAAAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGGTTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGGAACAATCACCATCACCCCAGGAGGAATCATAAACTTAAATTCACTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATTCCAGATCGTTCAGCTTCGGAATTTCATGTACCTGATCCGTACCCTAGTCTTATGAACAAATTATACGTCGAACAACGCAAAGACAAGTTTAGACAGTACGGATTGTGGGAACGTTACACTGATATGTATCCAAATGATGATCTTGTTTACACCGTTGGTGTTAACAAGTATCGGGATTGGTTTTATGCTCAAGTTACAAGAAGCACAGAAAATAAGACATATGAGCCAACAACATGGCAGATTATATTTGATCATCAACATGACATAATGAACGGAAACTACACTTTACAACTAGCCTTGGCTAGTGCTGCTGATGCTGACCTACAGGTTCGGTTCAATGACCCTAGCATATATCCACCGCACTTTGCGACAGGGCGCATAGGAGGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGCATTGGTTGTTCACCATTGATGTACCAAGTAATCTGCTTGTTAAAGGACAGAACATCATCTATCTGAGACAATCAAAAGCCATTAACCAATTTCAAGGAGTTATGTATGATTATATTCGTTTAGAACACCCACCAACAACTTGA 2016 0.3844 MLFWWLGMIVQLCFLLCGCSEKTSLRGSSKIINGIGLSSKVKLNTEEDQQQLVVDNGIVSVTLSRPEGYILGISYNGIDNILESKNEQVDRGYFDVTWNEPGKEGETQRIHGTNFSVIAADENMVELSFSKSWTSSMMGTDVPINIDKRYIFRSGDSGFYSYVIFDRPEGMPAIEVDQIRYVYKLDEDRFKYMALSDTRQRSMPSMNDRITGQILAYKEAVLLTKPSNPQFRGEVDDKYQYSCENTDNTVHGWISFDSDAPIGFWMITPSNEFRNGGPTKQDLTSHVGPYTLSMFVSTHYAGKEVTMAFQDGETYKKVFGPVFVYLNTDSKENDKLSLWTDAVQQSSKEVQSWPYDFLQSQDYFPPNQRGAVFGRLLVQDRYLQGGKFQCTNAYLGLALPGDAGSWQRESKGYQFWTRADAKGYFKINNVVPGDYNLYGWVPGFIGDYKYNGTITITPGGIINLNSLVYNPPRNGPTIWEIGIPDRSASEFHVPDPYPSLMNKLYVEQRKDKFRQYGLWERYTDMYPNDDLVYTVGVNKYRDWFYAQVTRSTENKTYEPTTWQIIFDHQHDIMNGNYTLQLALASAADADLQVRFNDPSIYPPHFATGRIGGDNAIARHGIHGLHWLFTIDVPSNLLVKGQNIIYLRQSKAINQFQGVMYDYIRLEHPPTT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01937 671 SUPERFAMILY Galactose mutarotase-like 43 334 IPR011013 GO:0003824|GO:0005975|GO:0030246
Trre15g01937 671 Pfam Polysaccharide lyase family 4, domain III 477 665 IPR029411 -
Trre15g01937 671 FunFam Rhamnogalacturonate lyase B 365 464 - -
Trre15g01937 671 SUPERFAMILY Galactose-binding domain-like 474 666 IPR008979 -
Trre15g01937 671 Pfam Polysaccharide lyase family 4, domain II 392 462 IPR029413 -
Trre15g01937 671 CDD RGL4_M 368 467 IPR029413 -
Trre15g01937 671 SUPERFAMILY Starch-binding domain-like 364 466 IPR013784 GO:0030246
Trre15g01937 671 Gene3D - 43 343 IPR014718 GO:0030246
Trre15g01937 671 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 669 - -
Trre15g01937 671 CDD RGL4_N 51 334 - -
Trre15g01937 671 Pfam Rhamnogalacturonate lyase family 44 235 IPR010325 -
Trre15g01937 671 CDD RGL4_C 479 666 - -
Trre15g01937 671 Gene3D - 366 466 - -
Trre15g01937 671 Gene3D - 474 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01937 Trre-Chr15 15658031 15666322 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01937 52 670 Polysaccharide Lyase AT1G09910 55.538 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01937 K18195 - gmx:100776664 1034.25