Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01925 ATGCCTTTAGGTTGCCCTCAATGTAAGGAAGGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTTTCAATCCGTAACCATCTTGAGAGGAACATAAAGGACAAGGACTCAAAGTTCAGACTCATCCTTGTTGATAGCAGAATCCACCGCCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTAG 213 0.4366 MPLGCPQCKEGLAPEIPEDLYHLIKKVVSIRNHLERNIKDKDSKFRLILVDSRIHRLARYYKKTKKLPPV 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01925 70 FunFam 40S ribosomal protein S13 15 70 - -
Trre15g01925 70 PANTHER RIBOSOMAL PROTEIN S15P/S13E 10 69 IPR023029 -
Trre15g01925 70 ProSitePatterns Ribosomal protein S15 signature. 30 60 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre15g01925 70 Pfam Ribosomal protein S15 15 65 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre15g01925 70 SUPERFAMILY S15/NS1 RNA-binding domain 11 68 IPR009068 -
Trre15g01925 70 SMART Ribosomal_S15_2 9 68 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre15g01925 70 CDD Ribosomal_S15p_S13e 9 69 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre15g01925 70 Gene3D - 14 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01925 Trre-Chr15 15565423 15566685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01925 11 70 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 91.667 1.56e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01925 K02953 - csv:101222584 115.931