Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01922 ATGGATTTGTCAAAAAATGAAAAGCAGATACTACGAGTGCCAAAACTTGAAGGTTTTGGTGAGACGAATCTTAAATCAATTGTTGAAATTCAAATGGGTTCTACTACTACGACTACTACTACTACCGTCAACAACTTTGTTCCCAAGTTGGATTTATTGGATTTGAACAAAGAAACTCGTTCGGTAGGTATCGAGTTAGCCGAGTCTTCCAAAGATGCAGTTGATAGTGATAATTCCAAAATTATTGCTACTACTCATACTATTGGCCAACGATCTTCAATCTACAGAGGAGTCACAAGGCACAGATGGACGGGTAGATATGAAGCACATCTATGGGACAACACCTCTAAACGAGAGGGCCAAATTAGGAAAGGGCGTCAAGGTGGGTATGATAAGGAAGAAAATGCAGCAAGGGCTTATGATTTGGCAGCACTCAAGTATTGGGGATCAGCAGCTATTACAAATTTTCCTGTTTCCGATTATGCAAAGGAATTGGAGGAGATGAAAGATGTCGGAAACCAAGAATTTGTTGCTTCACTGCGAAGGAAAAGCAGCGGTTTTTCTAGGGGCGTTTCCATATACCGCGGTGTTACAAGGCACCATCAACAGGGTAAATGGCAAGCACGAATTGGTCGAGTTGCTGGAAACAAAGATCTATACTTGGGATCATTTGCAACTGAAGTGGAAGCTGCAGAAGCATACGACATTGCTGCTATAAAGTTTAGAGGTGCAGACGCTGTAACCAATTTTGAGGCGAGTAGATACAATATGAGAGCTATATCAGCGACTTCTCTTCCAGTTAGCAGAGTAGTAAAACGCTTGAAACCTTCTCAACAATCAGAGATAAATTTTCTGCCAATTGCTTCTGTACCATATGGTTCTGCAACACAATATTTCCCCAGCAATCACTTCCACCATTTTAATCCTCCTACAAATGTAGAAAGCAGCACATCAGAGTCTGCTCCGACTATAACCAATGCAGCAGCTGAGTTATTCCTTTGGCCCCGTCCGGCTCGTTGA 1020 0.4206 MDLSKNEKQILRVPKLEGFGETNLKSIVEIQMGSTTTTTTTTVNNFVPKLDLLDLNKETRSVGIELAESSKDAVDSDNSKIIATTHTIGQRSSIYRGVTRHRWTGRYEAHLWDNTSKREGQIRKGRQGGYDKEENAARAYDLAALKYWGSAAITNFPVSDYAKELEEMKDVGNQEFVASLRRKSSGFSRGVSIYRGVTRHHQQGKWQARIGRVAGNKDLYLGSFATEVEAAEAYDIAAIKFRGADAVTNFEASRYNMRAISATSLPVSRVVKRLKPSQQSEINFLPIASVPYGSATQYFPSNHFHHFNPPTNVESSTSESAPTITNAAAELFLWPRPAR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01922 339 ProSiteProfiles AP2/ERF domain profile. 193 251 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 FunFam AP2-like ethylene-responsive transcription factor 192 253 - -
Trre15g01922 339 Pfam AP2 domain 193 243 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 Pfam AP2 domain 94 149 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 CDD AP2 192 253 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 ProSiteProfiles AP2/ERF domain profile. 94 157 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 SMART rav1_2 94 163 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 SMART rav1_2 193 257 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 CDD AP2 93 159 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 Gene3D AP2/ERF domain 94 159 IPR036955 GO:0003700|GO:0006355
Trre15g01922 339 Gene3D AP2/ERF domain 193 252 IPR036955 GO:0003700|GO:0006355
Trre15g01922 339 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 45 281 - -
Trre15g01922 339 SUPERFAMILY DNA-binding domain 93 159 IPR016177 GO:0003677
Trre15g01922 339 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 PRINTS Ethylene responsive element binding protein signature 233 253 IPR001471 GO:0003700|GO:0006355
Trre15g01922 339 SUPERFAMILY DNA-binding domain 192 252 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01922 Trre-Chr15 15555412 15558081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01922 87 277 AP2-EREBP Transcription Factor Family AT5G57390 72.680 3.18e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre15g01922 AP2 9.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01922 K09285 - gmx:100795280 366.311