Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01921 ATGAATATGTTCTGTTCAACATGCTTTCATGTTTTGCTTCTCTTTGCTACTACACTAACACTATGTCTCCAACATAAGAATACTGCTAGTGCTTTAGGAAATGATACAGACCAATTATCATTACTAAGATTCAAAGAAACAATAGTAGATGACCCTTTTGGTATCTTGAAATCTTGGAATACTTCAAATTACTTTTGCAACTGGCATGGAGTCACATGCAGCCTCAAACATCAAAGGGTCACTTCCTTGAACCTACAAGGATATGACTTACTTGGACTGATACCACCTGAAATTGGAAACCTCACCTTTCTGAGGTATGTTAACCTTCAAAACAATAGCTTCTATGGTGAAATACCTCAAGAAATAGGTCATTTGTTTAGGCTGCAAGAGCTTTATCTGACCAATAACACATTAAAAGGTCAAATTCCAACCAACTTGTCTAGTTGTTCTGAACTCAAGAGTTTGAGTTTAACAGGAAACAGACTAGTTGGAAAAATACCAAAGGAGCTTGGTTATCTTACTAAGCTAGAAGTTCTATCAATTGGTATGAACAATTTGAGTGGTGAAATCCCTGCATCTATAGGAAACCTTTCATCTCTTAGTATTCTAATTTTAGGAATCAATAATTTGAATGGAAAATTACCTGAAGAGATAGGCCATTTGAAAAACTTGACACATATATCCATTGCATCAAACAAACTATTTGGTATGCTTCCTTTTACATTATTTAATATGTCATCTCTCACTTACTTCTCAGCTGGTGTCAATCAATTTAATGGCTCTTTACCTGCCAACATGTTCCTCACACTCCCTAATCTCCAACAATTTGGCATTGGTATGAATAAGATCTCGGGTCCTATTCCGATTTCAATATCAAATGCGACACAATTGTTGTTATTTAACATCCCTAGGAATAACTTTGTTGGACAAGTTCCAACTGGAATTGGAAATCTAAAAAATATTTGGTCCATTGCTATGGAATATAATCATCTAGGGAGTAATTCATCCAAGGACTTGGATTTCTTGACATCTTTGACAAACTGCACAAATTTAAAAGTGTTGGATTTAAATCTAAACAACTTTGGTGGTTCTTTACCAAACTCTATAGCTAACTTTTCAGGTCAATTGAATCAGTTTTATATTGGTGGAAATCAGATTACTGGAAATATTCCTGCAGGATTAGGAAATCTCATCAATTTGATTGGCTTGGACTTGGAGTTCAACCTTCTCTCAGGCTCCATTCCATCTTCTTTGGGAAATTTTAAAAAGATACAATCATTAACATTGAATGTAAACAAACTCTCAGGAAAGATTCCGTCGTCACTTGGCAACCTTAGTCAGGTATTTCAACTGGACTTATCAAACAATATGCTAGAAGGAAACATTCCTCCTAGTATTGGTAATTGCCAAATGTTACAATACTTGGACCTTTCAAATAACCACCTTAGTGGACCATTCCTTGGCAAGTCATTGGGAGCCATGCCTTCATCTTTGGCTTCATTGAAAGGCCTTCGATGTTTAGATTTGTCACAAAACAACTTGTCGGGATCAATTCCAGAAGGTCTAGAGAGTATTCCTGTTCTACAGTACTTGAATATTTCTTTTAACAAGTTGGATGGTGAAGTACCAACAGAAGGTGTGTTTAGAAATGAAAGTGCAATATTTGTGAAAAACAACAGCGACCTTTGTGGTGGTATCACAGGGTTACATCTCCAACCATTATTTTGGAAGAAAAAAACACACTGGAGAACTTCCAATTTTCCATCAACAATAGATCACCATGCAAAGATCTCATACAGAACACTTTATCAAGCAACAAATGGATTCTCTTCCGACAACTTGATAGGGTCTGGTGGTTTTGGATTTGTATATAAAGGAATTCTGGAGTCGGAAGAAAGAGTTGTTGCTATAAAGGTCTTGAATCTTCAAGTCAAGGGAGCTCACAAGAGTTTCATCGCTGAATGTAATGCACTCAAAAGTATCCGTCATAGGAATCTTGTCAAGATTCTAACCTGTTGCTCAAGTATGGATTACAATGGTAATGAGTTCAAAGCTTTAGTTTTTGAGTACATGGAAAATGGAAGCTTAGATAAATGGCTACTTCCCGACTCCGAAATCAGACATCAGCCAAATTTGAACCTTCTTCAAAGACTTAATATTCTCACAGATGTTGCTTCTGCAATACACTATCTACACTATGAATCTGAGCAGCCAATCATTCACTGCGATTTAAAGCCAAGCAATATCCTTCTTCATAATGACATGGTTGCTCATGTTAGTGATTTTGGACTAGCAAGAATTCTGTGTGCCATCAATGGTATCTCTGATCTACAAACTAGCACAATTGGATTCAATGGAACAATTGGATATGCTCCTCCAGAATATGGAGTGGGAAGTCAAGTTTCAGCACAGGGTGATGTGTATAGCTTTGGAATTCTTTTACTGGAAATACTAACCAGAAGAAAACCGACAGATGAAATGTTTACAAATGGTATGAATCTTTATTCTTTTGTCAAGGTTTCACTGCCAGATAAACTCCTAGAGATAGTAGACTCAACTCTACTCCCAAGAGAATTGAAACAAACCATTGTATCGACAACAGCAGAAGAAGAAAATAATAGCGAGCAGAATCGAAGCCACTTGCACCCTAATGATCTGAAGCAATGCTTACTTGAACTCTTTTATATTGGACTTGCTTGTTCAGCAGAGTCACCAAGAGAAAGAATAAATATGAAGGATGTCACTAGGGAGCTAGATGTAATTAGAAATGCTCTTTCTCATGCCACTCATTAG 2793 0.3666 MNMFCSTCFHVLLLFATTLTLCLQHKNTASALGNDTDQLSLLRFKETIVDDPFGILKSWNTSNYFCNWHGVTCSLKHQRVTSLNLQGYDLLGLIPPEIGNLTFLRYVNLQNNSFYGEIPQEIGHLFRLQELYLTNNTLKGQIPTNLSSCSELKSLSLTGNRLVGKIPKELGYLTKLEVLSIGMNNLSGEIPASIGNLSSLSILILGINNLNGKLPEEIGHLKNLTHISIASNKLFGMLPFTLFNMSSLTYFSAGVNQFNGSLPANMFLTLPNLQQFGIGMNKISGPIPISISNATQLLLFNIPRNNFVGQVPTGIGNLKNIWSIAMEYNHLGSNSSKDLDFLTSLTNCTNLKVLDLNLNNFGGSLPNSIANFSGQLNQFYIGGNQITGNIPAGLGNLINLIGLDLEFNLLSGSIPSSLGNFKKIQSLTLNVNKLSGKIPSSLGNLSQVFQLDLSNNMLEGNIPPSIGNCQMLQYLDLSNNHLSGPFLGKSLGAMPSSLASLKGLRCLDLSQNNLSGSIPEGLESIPVLQYLNISFNKLDGEVPTEGVFRNESAIFVKNNSDLCGGITGLHLQPLFWKKKTHWRTSNFPSTIDHHAKISYRTLYQATNGFSSDNLIGSGGFGFVYKGILESEERVVAIKVLNLQVKGAHKSFIAECNALKSIRHRNLVKILTCCSSMDYNGNEFKALVFEYMENGSLDKWLLPDSEIRHQPNLNLLQRLNILTDVASAIHYLHYESEQPIIHCDLKPSNILLHNDMVAHVSDFGLARILCAINGISDLQTSTIGFNGTIGYAPPEYGVGSQVSAQGDVYSFGILLLEILTRRKPTDEMFTNGMNLYSFVKVSLPDKLLEIVDSTLLPRELKQTIVSTTAEEENNSEQNRSHLHPNDLKQCLLELFYIGLACSAESPRERINMKDVTRELDVIRNALSHATH 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01921 930 Gene3D Ribonuclease Inhibitor 238 570 IPR032675 -
Trre15g01921 930 SMART serkin_6 609 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01921 930 Gene3D Transferase(Phosphotransferase) domain 1 691 929 - -
Trre15g01921 930 SUPERFAMILY L domain-like 340 564 - -
Trre15g01921 930 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Trre15g01921 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Trre15g01921 930 SUPERFAMILY L domain-like 36 331 - -
Trre15g01921 930 PANTHER OS04G0122200 PROTEIN 492 916 - -
Trre15g01921 930 SUPERFAMILY Protein kinase-like (PK-like) 582 918 IPR011009 -
Trre15g01921 930 ProSitePatterns Protein kinases ATP-binding region signature. 615 638 IPR017441 GO:0005524
Trre15g01921 930 ProSiteProfiles Protein kinase domain profile. 609 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01921 930 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 691 930 - -
Trre15g01921 930 Gene3D Ribonuclease Inhibitor 148 236 IPR032675 -
Trre15g01921 930 FunFam LRR receptor-like serine/threonine-protein kinase EFR 580 690 - -
Trre15g01921 930 Pfam Leucine rich repeat 495 538 IPR001611 GO:0005515
Trre15g01921 930 Pfam Protein kinase domain 611 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01921 930 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515
Trre15g01921 930 SMART LRR_typ_2 525 550 IPR003591 -
Trre15g01921 930 SMART LRR_typ_2 221 245 IPR003591 -
Trre15g01921 930 SMART LRR_typ_2 173 197 IPR003591 -
Trre15g01921 930 SMART LRR_typ_2 445 469 IPR003591 -
Trre15g01921 930 SMART LRR_typ_2 397 421 IPR003591 -
Trre15g01921 930 SMART LRR_typ_2 125 149 IPR003591 -
Trre15g01921 930 SMART LRR_typ_2 501 524 IPR003591 -
Trre15g01921 930 PRINTS Leucine-rich repeat signature 501 514 - -
Trre15g01921 930 PRINTS Leucine-rich repeat signature 472 485 - -
Trre15g01921 930 FunFam Leucine-rich repeat receptor protein kinase EMS1 145 240 - -
Trre15g01921 930 Gene3D Phosphorylase Kinase; domain 1 574 690 - -
Trre15g01921 930 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 36 144 - -
Trre15g01921 930 Gene3D Ribonuclease Inhibitor 36 147 IPR032675 -
Trre15g01921 930 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 269 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01921 Trre-Chr15 15545552 15548909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01921 34 930 Receptor kinase-like Gene Family AT3G47570 42.999 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre15g01921 Pkinase 7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01921 - - qsu:112028276 936.021