Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01920 ATGGATGCAACTCAAGTTGAAAAAATCTATGTTGCAGTTGGCTATGATGTGGTAGATGGATTTCAAACATTGGAGTGGGCTCTCAAGAAATGGAATTATCATCCAAATATTTATATAATCATTTTACATGTTAATTACAATACTTCCAATGATCATGTTTATACACTTCTTGGAAAACTCCCTGCAAAAGGTGCATGTGAAGAAAAACTAGAACGTATAAGGAAATATGAGCAAAACATAATCAACAATTTGCTTTCCAAGTATATAGCTTTATGTGACAAAGTTCCAGCTGAAACATTCGAGGTTGAGAAATTTGATGAACCAATGCATAATCTCACTATAGACTTGATCCTTGGTCTTGGAATAACCAAATTGGTCATTGGATTTTCATTCATGAGGCCTTCCATGAAATCAAAAGATGTCATGAATGGATTATTCTATGTTCATCAATACAAGCCTGATTTTTGTGAGTTGTTCATTATATGTGGAGGCAAACAAGTTTCACCAAGAGTGAACAATGGTGAAATAACCATGGAGGATGGTAGTGGAGTCAAGGTTGCTAAAATGAGAGATAAGACAAATTTTATAGATTGGATAGAAAAAGTGTTTTGTGATAAAACCATTGATTCCAATGAAAGAGTTTCTAGCAGATCATCAACTTCCTCACCAAATTTGGAGGCACATCTTGACCAAAACCAGTGGGAATTTTATGTCCAAGAAATTAACAATTATTTTCAAGAGTTACTGTCCTTAAATTTGGAAGGGGAAAATTGTGAACAAGAATTTGATGATGATTCATTCATTAGTCCAATTGAGTCATATGTCCAACAACTTAAAAATTCTGATGATAAGAGTGCTGCAGGAAAATTAGAGATCCTTACATATAAACTGAATGAAGCTTATAATACAATTCAAATGAAAAGAAAAGAAGAAAAGGACAATTTGGATCGACATGCAAAAGCTGAATGGGCTATTTACATATGTAATCGTCAGGAAGAAGAACTTGAATATCTAAAAAGTGAAGAAGTGACAAAAAGGGAAGAGCTAAAGAAAGAACTTAATGTAGAAAAAGAACAAATTAAAAAAATTAGAATGAATGTTGAAGAAAGCAAACAAAGGCTTAGCTCATTGGTTGAGCAACAACTAGACCTAAAAAATAAGCTTCATGTTTCCACATTGGAAATTTCAGAATTTGAAACAAAACTTGAGAATGTAATGGCTGCAAGGACAAAGATGTTAATGGATATAGAGGAACTAAGTAAACAAAGGGATGTGTTGAACAAAAGGATCATGTTTTCCAAAGAAAAAGATGACACAAAAATTAGTGCTAAGCTTATAGAGAATAGTTTTGGTGTAAGAGAGTACACAAAGGAAGAAATCATCTTGGCCACCAACAACTTTTCAGAATACTTTAGGTTGAAATCTGGTGGTGATTGGAGTAATGTTTATAGAGGAAATATTAATCATTCCAAAGTTGCAATCAAGATGCTTGATTCTACTCTTGCCTTGTCTCAACAAGATTTCCAAGCTAAGTTGAGGTGTATTGGTAATATTCGGCATCCGCATCTAGTTGCTGTATTGGGATTCTGTTCTGAGCCCAAATGCTTAGTTTTGGAATACATGCACAATGGAAACTTGGAAGAAAAGTTACTTTGCAAGACCATAAGCTGGCAAGATTGCATAAGAATAGCCATAGAAGTTTGTTCTGGGCTGGGCTTTCTCAACTCATTTCAGCCCAGGCCCATTATTCATTGTCACATTTCTCCATCAAACATTCTCCTAGCTCACAATCTTGTTGCAAAGGTGGCATTTGAGTTTCATGGTTGCAATAAAGAATGTAATAATGTTGGGTTAGATGTGAAGGAAATAGGATTTTTGTTGTTGCATATATTGACTGGAAGAGGAAATCGTGTGACAATTGATTTGGAGGCCTTTTATGATGATATTGGTGAAGAATGGCCATTGGATGTAGCAAGAGAACTTTTGGACTTAGCAATAAGGTGCATGTCCAATGTAGAAATGAGTATAGGAAGTGTCATGGAAGAACTCAATGAAATCAAAAGAAAGGGTTGTGACTCCAATAAAGTGCCTAACATTTTTCTTTGCCCAATCCAAAAGATGGTAATGAGAAATCCATACATAGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAAGAATGGTTGCAATCTGGAAATGACATATCACCAAAAAGCTTGAGGCTGAATAATACATTAATTTTCCCTAATCATAACCTCCGTTCCCTAATTCAGTATTGGCATAGGAAGAAATTAGCTAATCAAGTTGTAAAATAA 2319 0.3463 MDATQVEKIYVAVGYDVVDGFQTLEWALKKWNYHPNIYIIILHVNYNTSNDHVYTLLGKLPAKGACEEKLERIRKYEQNIINNLLSKYIALCDKVPAETFEVEKFDEPMHNLTIDLILGLGITKLVIGFSFMRPSMKSKDVMNGLFYVHQYKPDFCELFIICGGKQVSPRVNNGEITMEDGSGVKVAKMRDKTNFIDWIEKVFCDKTIDSNERVSSRSSTSSPNLEAHLDQNQWEFYVQEINNYFQELLSLNLEGENCEQEFDDDSFISPIESYVQQLKNSDDKSAAGKLEILTYKLNEAYNTIQMKRKEEKDNLDRHAKAEWAIYICNRQEEELEYLKSEEVTKREELKKELNVEKEQIKKIRMNVEESKQRLSSLVEQQLDLKNKLHVSTLEISEFETKLENVMAARTKMLMDIEELSKQRDVLNKRIMFSKEKDDTKISAKLIENSFGVREYTKEEIILATNNFSEYFRLKSGGDWSNVYRGNINHSKVAIKMLDSTLALSQQDFQAKLRCIGNIRHPHLVAVLGFCSEPKCLVLEYMHNGNLEEKLLCKTISWQDCIRIAIEVCSGLGFLNSFQPRPIIHCHISPSNILLAHNLVAKVAFEFHGCNKECNNVGLDVKEIGFLLLHILTGRGNRVTIDLEAFYDDIGEEWPLDVARELLDLAIRCMSNVEMSIGSVMEELNEIKRKGCDSNKVPNIFLCPIQKMVMRNPYIAADGFSYELEAIEEWLQSGNDISPKSLRLNNTLIFPNHNLRSLIQYWHRKKLANQVVK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01920 772 Gene3D Phosphorylase Kinase; domain 1 451 540 - -
Trre15g01920 772 Pfam Protein tyrosine and serine/threonine kinase 477 603 IPR001245 GO:0004672|GO:0006468
Trre15g01920 772 Coils Coil 339 387 - -
Trre15g01920 772 PANTHER OS02G0152300 PROTEIN 9 759 - -
Trre15g01920 772 SUPERFAMILY RING/U-box 696 764 - -
Trre15g01920 772 Gene3D Transferase(Phosphotransferase) domain 1 541 606 - -
Trre15g01920 772 CDD RING-Ubox_WDSUB1-like 697 751 - -
Trre15g01920 772 ProSiteProfiles U-box domain profile. 695 768 IPR003613 GO:0004842|GO:0016567
Trre15g01920 772 SUPERFAMILY Protein kinase-like (PK-like) 449 603 IPR011009 -
Trre15g01920 772 Pfam U-box domain 696 765 IPR003613 GO:0004842|GO:0016567
Trre15g01920 772 SMART Ubox_2 699 761 IPR003613 GO:0004842|GO:0016567
Trre15g01920 772 ProSiteProfiles Protein kinase domain profile. 468 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01920 772 Coils Coil 416 436 - -
Trre15g01920 772 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 769 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01920 Trre-Chr15 15539290 15544463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01920 3 767 U-box Gene Family AT5G65500 42.699 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre15g01920 PK_Tyr_Ser-Thr 2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01920 - - gmx:100795815 946.036