Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01897 ATGGAGACACACGGCTATTCACCCTTCCACTCCTCTCTGAACCCAGGTGTGGCTTTGCTCTCACAGAGAATGTTTCCGAAATGCCGCACTTTTATTGAAGGTCATCCAAAATCTGATTCCAACATTGTTGCTCAACTTCACCACATGCAAGCCATTGTTGATGTCCTTGAATCTGCATCTCTCCGATTGGGTCCCACCAAAACTCACCCTGACCACTATTCTGTCCTCCAAGTCAAACCATGTGACGCTGCAAGCCGTGACTTTGTCCGACAGCAATTCAAGAAGCTGGTTCGTTTATTGGACCCAAACAAGAATAAGTTTCCTTTTGCTGATGAAGCTCTAATGAGAGTTCGGGAAGCCTGGTATGTTCTCTCTGATCCCATTAGATTAGACCAATTTGAACTTGAAATTCGTGGAGAAGGAAATGGTTTTTCATCTGCTTCATTTTGGACTATGTGTCCTTATTGCTGGTATTTACACGAGTATGAGAGAAAGTATGAAGATTTTACACTTCGTTGTGAAAATTGTAAGAGGACTTTTCATGGAACTGCTGTGAATCCGCCGGATCCGGAATCAATGGTGGAGGGGAAAGAACAATATTATTGCTATCACATGAGTTTGCCCTTAAGGTACCCTGCTGAAAACATGTCTCAGTTTGAACTTGGTGGAAATGGAGGAAAGAGAATGAGGATTAAAACTGTGGCTAACAGAGTTAGAGTTAAAGGGTTTGTTCTGGATAGCGACTCAGAGCCTGAAATGGAAGTTGAAATCTGA 774 0.4289 METHGYSPFHSSLNPGVALLSQRMFPKCRTFIEGHPKSDSNIVAQLHHMQAIVDVLESASLRLGPTKTHPDHYSVLQVKPCDAASRDFVRQQFKKLVRLLDPNKNKFPFADEALMRVREAWYVLSDPIRLDQFELEIRGEGNGFSSASFWTMCPYCWYLHEYERKYEDFTLRCENCKRTFHGTAVNPPDPESMVEGKEQYYCYHMSLPLRYPAENMSQFELGGNGGKRMRIKTVANRVRVKGFVLDSDSEPEMEVEI 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01897 257 SUPERFAMILY FYVE/PHD zinc finger 148 203 IPR011011 -
Trre15g01897 257 SUPERFAMILY Chaperone J-domain 66 135 IPR036869 -
Trre15g01897 257 CDD PHD_SF 152 202 - -
Trre15g01897 257 Pfam DnaJ domain 71 129 IPR001623 -
Trre15g01897 257 ProSiteProfiles dnaJ domain profile. 71 145 IPR001623 -
Trre15g01897 257 SMART dnaj_3 70 129 IPR001623 -
Trre15g01897 257 Gene3D DnaJ domain 65 143 IPR036869 -
Trre15g01897 257 CDD DnaJ 71 126 IPR001623 -
Trre15g01897 257 Coils Coil 159 179 - -
Trre15g01897 257 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 18 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01897 Trre-Chr15 15353211 15353984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01897 48 243 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.864 1.42e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01897 - - psat:127074958 360.918