Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01885 ATGTTGTTTTCAATTCCATTTCTTGTTGTCTTTTCAAGTCTTTGCTTAATAACAGGGAAAATAGAAAACAAAGAAAAGAATGAAGAGATGGTGATGAGTACTAAAGCTGAAACAGTGACGATTAACTCATCACAAGTGAAAATATCAACCCAAATTGAGAAATCTCATATGTATGTTCAAAACAATAGTTTCAAGTCAAATTTTAAGGAATGTTTAAAAAACCATGCTGCTAGCATTGGTGGTTATTCTATTGATGGGTGCTGTGAGTTTCTACCCGGTGGCAATGAAGGTACAGCAGAGTTTTTAAAATGCGCTGCCTGCAGTTGTCACCGCAATTTTCACCGAAAAGAAACAGTTGTTGTGTCTGAAGATGTGATACCTTTTTCGTTCAATAAATCAAGCCACCCTCCGGCTCCAGCTCCAGCTCCGACTCCTTACACAGCGTATTCGAGCAGGGGTGGTGAAGAAAATGTTCATGCTCATCATGTTTTTGAGCATATCCAAGGTGGTGGAGAAGGTTCGTCGAATTCGAAGAAAAGGTTCAGGACGAAGTTCACTACCGAACAAAAGGAAAAGATGATGGATTTTGCAACAACATTGGGTTGGAAGATCCAAAAGAAGGATGGGAATATAGTTGAAGATTTTTGCAAGCAAATTGGGGTGCAGCGTCATGTATTTAATGTTTGGATACATAACAACAAGTATACCCTAGGTAAAATGCCCTAG 726 0.3898 MLFSIPFLVVFSSLCLITGKIENKEKNEEMVMSTKAETVTINSSQVKISTQIEKSHMYVQNNSFKSNFKECLKNHAASIGGYSIDGCCEFLPGGNEGTAEFLKCAACSCHRNFHRKETVVVSEDVIPFSFNKSSHPPAPAPAPTPYTAYSSRGGEENVHAHHVFEHIQGGGEGSSNSKKRFRTKFTTEQKEKMMDFATTLGWKIQKKDGNIVEDFCKQIGVQRHVFNVWIHNNKYTLGKMP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01885 241 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 236 - -
Trre15g01885 241 Gene3D - 165 238 - -
Trre15g01885 241 NCBIfam homeobox domain, ZF-HD class 178 235 IPR006455 -
Trre15g01885 241 Pfam ZF-HD protein dimerisation region 67 118 IPR006456 -
Trre15g01885 241 FunFam Zinc-finger homeodomain protein 2 168 239 - -
Trre15g01885 241 SUPERFAMILY Homeodomain-like 164 239 IPR009057 -
Trre15g01885 241 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 117 IPR006456 -
Trre15g01885 241 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01885 Trre-Chr15 15252536 15253261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01885 65 237 ZF-HD Transcription Factor Family AT4G24660 48.571 4.57e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre15g01885 ZF-HD_dimer 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01885 - - mtr:11410439 233.802