Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01865 ATGGCTAAATTCTTGTGGTTTTCATGGTTTCTAATATTTTTCCTTTTGGTGGTACAGATGCAAATCGTAACTAGCCAGTCAAACCCAAAATCGACTGGAGAGATTAAGTTGAGGGTCGGGGTCCCTATGAAAGACGGTTTTTCCCAATTTGTGAAAGTAGTTTGGAATTCTCATGAAAACAAGTATAATGTCTCTGGATATTGCATGGATATTTTCAATGCAGTTGTAAACAACATAACAGCTTTTATGGTTTCTCTACAATTTGAACCTTATGTTAATGAATCAAAACACAGTGCAGGAACATATGATGAACTTATCCAACAGGTGCCAACAAAGTATGATGTTGTGGTTGGAGACATAACAATTGTGGCAAATCGTTCAACAAGTGTAGATTTTACACTGCCATATACAGAATCAGGAGTTAGAATGTTAGTTCCAGTTCAACATGGGAGACACAAAACCATGTGGATTTTTGTGAAACCCTTTAGTTGGGATCTTTGGTTGAGTATAGTCATAATATCCATGTTCATAGGGTTTGTCATACTCATCATGGAAAGAAATGTACATACTCTTCCTAATCATCAAGAGGAGCTTTCACCATTTAAAAAACAGCTCAGTGCAATAACTATTTTATGGTTTCCGATATCACAGGCAGTTCTTCCCGAAAGACAAGTGGTTGCAAAGAATTGTTCGAGATTTGTTTTGATGGTTTGGCTTCTATTGGCGTTTGTCCTTATGCAAAGCTACACAGCAAACTTGACCTCTATATTGACCTTAGATCATATGCAACCTAGTTTTCTCAATGTGAATGATCTAAGGAAAGGGGAACATTATATTGGATACCAAGACGGTTCTTTTGTTTATGATTTGTTGGTACAACAATTGAAGTTTAATCCATTGAAATTGAAGGCATATGGCAACATTTCTAGCTATTACCATGCTTTAAAACTTGGAAGCCAACGTGGGGGTGTCACAGCTATATTTGATGAAGTGCCCTATCTTAATGTCTACCTTCAAAAGTTTAAATCCAATTACATCATAGCTGGCCCAACATATCAAACCGATGGATTTGGTTTTGCATTCCCTTTAAATTCAAATCTTACTGCTCACTTCTCAAGAGCCATATTGAGTGTGACTGAAAATCATGAATTTATGGAAAAGATTGAGAAAAAATATTTTGGGAAAAGTATTGAAGTTCTACAACAACAGTCTGTGCAAATATCTTCAGCTTCACCAAGTCTTACCTTTCACAGCTTTGCAGGGTTATTCTTAATCACAGGCATTTCTACCTTAATGGCATTATTTGTTTCTGAAACTCTTATTTTTTGGCAAAATTCCATTTCAATGGTTAAAGAATATAGTCAGATATGGTTCTTACATTCACCACCTTCCACACAAACATCTAATGATCTTCAATCAACAGAAGGAACCAGTCGACCAAACCTCCCTTGCGACTTATGA 1461 0.3628 MAKFLWFSWFLIFFLLVVQMQIVTSQSNPKSTGEIKLRVGVPMKDGFSQFVKVVWNSHENKYNVSGYCMDIFNAVVNNITAFMVSLQFEPYVNESKHSAGTYDELIQQVPTKYDVVVGDITIVANRSTSVDFTLPYTESGVRMLVPVQHGRHKTMWIFVKPFSWDLWLSIVIISMFIGFVILIMERNVHTLPNHQEELSPFKKQLSAITILWFPISQAVLPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDHMQPSFLNVNDLRKGEHYIGYQDGSFVYDLLVQQLKFNPLKLKAYGNISSYYHALKLGSQRGGVTAIFDEVPYLNVYLQKFKSNYIIAGPTYQTDGFGFAFPLNSNLTAHFSRAILSVTENHEFMEKIEKKYFGKSIEVLQQQSVQISSASPSLTFHSFAGLFLITGISTLMALFVSETLIFWQNSISMVKEYSQIWFLHSPPSTQTSNDLQSTEGTSRPNLPCDL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01865 486 Gene3D - 30 154 - -
Trre15g01865 486 Gene3D - 155 292 - -
Trre15g01865 486 PRINTS NMDA receptor signature 233 260 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Trre15g01865 486 PRINTS NMDA receptor signature 419 443 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Trre15g01865 486 MobiDBLite consensus disorder prediction 467 486 - -
Trre15g01865 486 Pfam Ligand-gated ion channel 396 428 IPR001320 GO:0015276|GO:0016020
Trre15g01865 486 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 456 IPR015683 -
Trre15g01865 486 FunFam Glutamate receptor 2.7 32 154 - -
Trre15g01865 486 Pfam Bacterial extracellular solute-binding proteins, family 3 61 395 IPR001638 -
Trre15g01865 486 Gene3D - 358 393 - -
Trre15g01865 486 SMART GluR_14 36 395 IPR001320 GO:0015276|GO:0016020
Trre15g01865 486 Gene3D - 321 357 - -
Trre15g01865 486 SUPERFAMILY Periplasmic binding protein-like II 2 396 - -
Trre15g01865 486 CDD GluR_Plant 36 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01865 Trre-Chr15 15073602 15076861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01865 32 457 Ion Channels AT2G29110 41.435 6.42e-83 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01865 K05387 - tpra:123903997 755.747