Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01823 ATGGATTCTTTCTTAACCCTTGAAACACCTTCTCCATCTCCTACACCTTCTCATCCTGTTAATGTTCCTAATTTTGCATTTTCTAATCAAATCCCTAATATTTTACCCCCAAATTCAACAACTACTTTCATTTCACCCCCAAATTCAACCACCACCTTCATTTCACCACCAAACACCACCATTTCCGCCGGACAACAGCTTCAGACGTTACTTGTTCCAAAGGCTGAACCTTTAGATGATTTCTTCGCTACCCAAGATACTCAACAACAACACTTTTATTCTCCTGGTTCTGGGCAAAATGAGCAATCTGAGTTATACAATGAATTCTACCGTGTTTCTGAGCTATTCAATTCTATTTTCGATACTGTTGATTCTCAGTCATTGGAGGTTGAGAATAATAATGATCGTGCTCTTGTTGTTGTTCCTGAGAGACAAGAATCCAGTTCACAGGTTGCTGTGGTTAGAAAGAGGGCTAATCAGGTTATGGAGCTGGTCAGGGTGTCGGATCTGAGTGTTAAAGATCAGATAAATTTGCGGGAGTTAATGAGGAAGACTAGAATGGTTTACGATTCGCTACGTGTGTTAGCGAGTATTGAGGAGGAAAAGAGGATGGCTGAGGAGAGGAGAACGGCTGCTGAAGTTGCAATTGTGGAGGAGGAGAGGAGGCTCATTGAGGAGAGGAGGCTGGCTGAAGAGAGGAGATTGGTTGCTGAGGTTGCATTGATGGAAGCTGAGATGGGAGTCGGTGAAGAGAGAAATGTGGAGGGAGCTCCTGCAGGGGTGGATGTGGAAACGCCGATTAGAAGAAGGGGTCGCGTTCGCAACCGTATCCGCGGTGATATGAGGGCAGCCGCATTGATGAGGAAACGCGAGCTGTGGCTATATCGCGATAAGAGGATAGTTGGACCGATACCCGGAGTCTATGTCGGTGATGTATTTCTTTTTAGGATGGAGTTGTGCGTAGTCGGTTTGCACATGCAAATACAAGCTGGGATTGACTATCTACCCAAGAGCAGGTGTTCCAATGGCGAGCCCATTGCTACGAGTGTCATTGTCTCGGGTGGGTACGAAGATGACATGGAATTAGATGATGGAGATGTGATAATTTACACTGGCCATGGAGGACAAGAGAAGAATTCCTCCAGGCAAATATGCGATCAGAAATTGGTGGGCGGAAACCTTGCTTTAGAAAGGAGCATGCACTACGGCATTGAGGTTAGGGTTATCCGTGGGATGAAGTATGAAGGGAGTGCGTCCGGTTCTGGTAAGGTATATGTATACGACGGATTATATAGAATAGTTGATTGTTGGTTTGACGTAGGAAAATCTGGCTTTGGTGTTTACAAGTACAAGCTGTTGAGAATAGAGGGGCAAGCCAAGTTGGGCAGCGCTGTTCTGAAAGAAGCCAGAGATATGAAAAAAGGTGGATTAGATTTTAAGCCTATGTATTGTCTTTCTGTTGATATTTCAAACAAGAGGGAGAGTGTTCCTGTTAGGCTCTATAATGATATAGATGATAATCAGGAACCTCTGTTTTATGAGTATCTTCGGAATACTAGTTTTCCGCAATTTGTGTTTCATCAGAGTGGGAAAGCTACTGGTTGTCAGTGTGTGGAAGCTTGTACTGATGGTTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCTTATAATCTACAGGGTTTACTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCCTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGCTCAAATTTAGGCTGGAAGTGTTTAGGTCTACTCAGACGGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAGGCCGGAGCTTTTATCTTTGTTTTGAAGGTTGCTGAAGCCGAGTTTTGGCCATGGATAGCTGGGGCTTGCCATGATTTTCAGAAGGCTTCAACCTTACCAAATTTCATGGAACTTTTGGAAGTGCTTTCTATTTCAGGAATTGGAGTTACATCATGTATGCTTAATGTTGTCTGTTGTATCGATACTCAATACTCTCTGACATACCGGTATGCTCCGATACTCCGTCGAATTGCAAATGCTCTTGATGTATAG 2097 0.4402 MDSFLTLETPSPSPTPSHPVNVPNFAFSNQIPNILPPNSTTTFISPPNSTTTFISPPNTTISAGQQLQTLLVPKAEPLDDFFATQDTQQQHFYSPGSGQNEQSELYNEFYRVSELFNSIFDTVDSQSLEVENNNDRALVVVPERQESSSQVAVVRKRANQVMELVRVSDLSVKDQINLRELMRKTRMVYDSLRVLASIEEEKRMAEERRTAAEVAIVEEERRLIEERRLAEERRLVAEVALMEAEMGVGEERNVEGAPAGVDVETPIRRRGRVRNRIRGDMRAAALMRKRELWLYRDKRIVGPIPGVYVGDVFLFRMELCVVGLHMQIQAGIDYLPKSRCSNGEPIATSVIVSGGYEDDMELDDGDVIIYTGHGGQEKNSSRQICDQKLVGGNLALERSMHYGIEVRVIRGMKYEGSASGSGKVYVYDGLYRIVDCWFDVGKSGFGVYKYKLLRIEGQAKLGSAVLKEARDMKKGGLDFKPMYCLSVDISNKRESVPVRLYNDIDDNQEPLFYEYLRNTSFPQFVFHQSGKATGCQCVEACTDGCFCSMKNGGEFPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVAQKGLKFRLEVFRSTQTGWGVRSLDLIQAGAFIFVLKVAEAEFWPWIAGACHDFQKASTLPNFMELLEVLSISGIGVTSCMLNVVCCIDTQYSLTYRYAPILRRIANALDV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01823 698 ProSiteProfiles YDG domain profile. 302 454 IPR003105 -
Trre15g01823 698 Pfam Pre-SET motif 489 586 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre15g01823 698 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 111 620 - -
Trre15g01823 698 Pfam SAD/SRA domain 301 458 IPR003105 -
Trre15g01823 698 SUPERFAMILY SET domain 479 629 IPR046341 -
Trre15g01823 698 SMART preset_2 486 578 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre15g01823 698 Coils Coil 195 222 - -
Trre15g01823 698 ProSiteProfiles Pre-SET domain profile. 533 591 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre15g01823 698 Gene3D SET domain 463 624 IPR046341 -
Trre15g01823 698 Gene3D - 299 462 IPR036987 -
Trre15g01823 698 SMART G9a_1 297 458 IPR003105 -
Trre15g01823 698 SUPERFAMILY PUA domain-like 283 466 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01823 Trre-Chr15 14717134 14720954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01823 298 620 Su(var)3-9 homologs AT1G73100 44.479 5.88e-81 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01823 - K11420 tpra:123924427 788.875