Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01818 ATGTCTCGTTCAGTTCCTTTGGTTTCCACCATCTTTGTCTTCCTTCTCCTTCTTGTAGCCACTGGGCCAAGTATGGTGGCTGAGGCAAGGACATGTGAGTCACAAAGTCACAAATTCAAAGGACCATGTGCTAGTGATCACAATTGTGCTTCTGTTTGCCAAACAGAACGTTTCCCTGGAGGACACTGCCGTGGATTCCGTCGTAGATGCTTTTGCACTAAACATTGTTAA 231 0.4589 MSRSVPLVSTIFVFLLLLVATGPSMVAEARTCESQSHKFKGPCASDHNCASVCQTERFPGGHCRGFRRRCFCTKHC 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01818 76 Pfam Gamma-thionin family 30 76 - -
Trre15g01818 76 SUPERFAMILY Scorpion toxin-like 30 76 IPR036574 -
Trre15g01818 76 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952
Trre15g01818 76 CDD Knot1 41 73 IPR003614 GO:0006952
Trre15g01818 76 PRINTS Purothionin signature 31 46 IPR008176 GO:0006952
Trre15g01818 76 PRINTS Purothionin signature 61 75 IPR008176 GO:0006952
Trre15g01818 76 Gene3D - 30 76 IPR036574 -
Trre15g01818 76 SMART gth_4 31 76 IPR003614 GO:0006952
Trre15g01818 76 PANTHER DEFENSIN-LIKE PROTEIN 1 8 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01818 Trre-Chr15 14652835 14653315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01818 1 76 Plant Defensins Gene Families AT2G02100 58.442 5.57e-29 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01818 - - gmx:547843 139.043