Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01806 ATGCTAGAAAACATCCTTACAATAACTGCAAGAGGTGAAAAAATTGGCCTTCATCATTTTTCTCCCATAAGGCCCTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTCCGGGGAACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGCTAAATCGTAACAAGGTTCATCGAGCTTGTATTGAAAGAGAGATTATATCATTACTTGATCATCCTTTTCTTCCAGCACTATACACCTCATTTCAGACAGACACACATGTATGTTTGATTACTGACTTCTGCCCTGGAGGGGAGTTGTTCGGATTACTCGACAGGCAACCCATGAAGATTTTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATTGGTTTGGAATATCTCCATTGTTTGGGTATAATTTATCGGGACTTAAAGCCTGAAAATCTCTTACTTCAGAAGGATGGCCATATTGTATTAACTGATTTTGATCTATCATTTATTACAACTTGTAAACCTCAGGTTGTAAAGCAGTCATTACCTGGTAGTAGAAGATCTCGAAGTCAGCCACCACCATTATTTGTTGCAGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAGTATATTGCCCCGGAAATCATAACTGGAGCGAGGCATACAAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTATACGGTCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCTAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAGGCAGCCGTCTAGGTTCAACTACAGGAGCCAATGATATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGAAACATGAGTCCACCCCCTTTAGATGTTCCTCTTCAATTTATAGGAATTGATCCAACGGCAAAGGACAAGAAATGGGAAGATGATGGTGTGCTAACTACCTCCATTGATATGGATATTTTTTGA 1068 0.4026 MLENILTITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPALYTSFQTDTHVCLITDFCPGGELFGLLDRQPMKILKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENLLLQKDGHIVLTDFDLSFITTCKPQVVKQSLPGSRRSRSQPPPLFVAEPITQSNSFVGTEEYIAPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPGSRLGSTTGANDIKQHPFFRGINWPLIRNMSPPPLDVPLQFIGIDPTAKDKKWEDDGVLTTSIDMDIF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01806 355 SMART serkin_6 20 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01806 355 Gene3D Transferase(Phosphotransferase) domain 1 104 320 - -
Trre15g01806 355 PANTHER FLIPPASE KINASE 1-RELATED 3 322 - -
Trre15g01806 355 CDD STKc_phototropin_like 18 329 - -
Trre15g01806 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Trre15g01806 355 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Trre15g01806 355 FunFam Putative LOV domain-containing protein 104 318 - -
Trre15g01806 355 SUPERFAMILY Protein kinase-like (PK-like) 10 334 IPR011009 -
Trre15g01806 355 Pfam Protein kinase domain 23 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01806 355 ProSiteProfiles Protein kinase domain profile. 20 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01806 355 FunFam LOV domain-containing protein 19 103 - -
Trre15g01806 355 Gene3D Phosphorylase Kinase; domain 1 19 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01806 Trre-Chr15 14502485 14507642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01806 5 354 AGC Kinase Gene Family AT5G58140 82.336 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre15g01806 Pkinase 3.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01806 K20715 - gmx:100804783 639.417