Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01804 ATGGAGAAAAAGGAATCATCATCTAAGTATGATCAACATCAAGATTCTGCTAAAAAAGGTACAAAATTCGATGGAGATTCTGTGACGGTTTCGTCTAATTCGGGAAAGAGTGAAGAACCTGTGAATAAATGGATGGCATTTGCTAACAAATCAGATGAAAACTCGACAACGACAAAGGCTCCTTCTGGCGATGACGATCAAATTATAACCGAAGCAGCCATAGCCGAGAGAGCTGCGGAATGGGGACTAGTTGTTAACTCAGGCAATTTGAAAGCAGCAGTCGAGACAACAAGTTATTCATTAGACGGTGATAAGGGCAAAGGCATGTCTGATAGGTTTGCTGATTCGACAAGGACTTCCGGTGAATCGAATTATGGTTCGGAGGCTAAATTATCAGGGTTGTTTCCAAGAGTTTCACAAGAGTTGAAGGAAGCATTGGCTACACTTCAACAAACATTTGTCGTCTCTGATGCAACTAAACCTGATTGCCCTATCTTGTATGCTAGCAGTGGTTTTTTTACTATGACCGGTTACTCTTCCAAAGAAGTTATTGGAAGGAATTGCCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCTAAAATTCGGGATGCAACGAAGAATGGGAGGAGTTATTGCGGCAGACTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTCACTGTCACTCCAATCAAAGACGATCGTGGCAATACCATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGTGTGAATGAGAAGGCACTAAGACCAAATGGATTACCAAAATCATTAATTCGTTACGATGCTCGTCAAAAGGAGAAAGCTATGGGATCAATCACCGAGGTTGTTCAAACCGTTAAGGATCCAAAATCGATAATTCGTGGTATGAATGATGAAACTGATGCCACCAAGCATGAAGAGCTAGACAAACTCAATTATGATTTTGCTTTGCCGAAGCTTGTTGAATCTGAGAACACTAGTACACCACCTAGTAATCATATGTCGCGCTTTAGTTCTTACGAGGAAAGGAACAATAAGTCATCAAGAAAATCAGGAATTACTTCTTTCAAAGGTGTCAAAGGGAAATCAATGAGTGCTGTAGGGAGAGATAAGGAAAAAGCTATTATTGAACCTGAAGTTTTGATGACAAAAGAAGTAGAGTGGTCCAAATGGGAACAAAGAGAGAGAGATATAAGGCAAGGAATTGATCTAGCAACCACATTGGAGAGAATAGAAAAGAATTTTGTGATTTCTGATCCAAGACTTCCAGATTGTCCTATTATATTTGCATCAGATAGTTTTCTCGAGCTTACAGAATATACGCGAGAAGAAATTTTGGGTCGAAACTGTCGGTTTCTTCAAGGACCAGAAACAGACCAAACAACTGTGTCTAGGATTAGAGACGCTATCAAAGATCAGAGGGAAATCACAGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGACGGAAGTGATCATTTAGAACCTTTAAGAAACCGTCTGTCTGAAGGTTCTGAGCAACAAAGTGCTAAGTTGGTAAAAGCCACTGCAGTAAATGTTGATGAAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTTTCTCCAAGACCACACAAAAGGGACAATCCTTCTTGGGTAGCTATTCAAAAGGTATCAATTTATTTTTTTCACTTCCTTTGTAGTGAAATTTATATTTATTGTATCATAATTAAAAACTCATAA 1869 0.3906 MEKKESSSKYDQHQDSAKKGTKFDGDSVTVSSNSGKSEEPVNKWMAFANKSDENSTTTKAPSGDDDQIITEAAIAERAAEWGLVVNSGNLKAAVETTSYSLDGDKGKGMSDRFADSTRTSGESNYGSEAKLSGLFPRVSQELKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDRGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKDPKSIIRGMNDETDATKHEELDKLNYDFALPKLVESENTSTPPSNHMSRFSSYEERNNKSSRKSGITSFKGVKGKSMSAVGRDKEKAIIEPEVLMTKEVEWSKWEQRERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTVSRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSEQQSAKLVKATAVNVDEAVRELPDANLRPEDLWAIHSQPVSPRPHKRDNPSWVAIQKVSIYFFHFLCSEIYIYCIIIKNS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01804 622 SMART pas_2 140 209 IPR000014 -
Trre15g01804 622 SMART pas_2 413 482 IPR000014 -
Trre15g01804 622 FunFam Putative LOV domain-containing protein 152 308 - -
Trre15g01804 622 SUPERFAMILY PYP-like sensor domain (PAS domain) 430 526 IPR035965 -
Trre15g01804 622 MobiDBLite consensus disorder prediction 25 39 - -
Trre15g01804 622 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g01804 622 FunFam LOV domain-containing protein 400 564 - -
Trre15g01804 622 PANTHER PROTEIN TWIN LOV 1 409 601 - -
Trre15g01804 622 CDD PAS 438 526 IPR000014 -
Trre15g01804 622 Gene3D PAS domain 400 564 - -
Trre15g01804 622 MobiDBLite consensus disorder prediction 333 367 - -
Trre15g01804 622 ProSiteProfiles PAS repeat profile. 138 211 IPR000014 -
Trre15g01804 622 SUPERFAMILY PYP-like sensor domain (PAS domain) 159 251 IPR035965 -
Trre15g01804 622 ProSiteProfiles PAC domain profile. 485 539 IPR000700 -
Trre15g01804 622 CDD PAS 165 254 IPR000014 -
Trre15g01804 622 Gene3D PAS domain 152 323 - -
Trre15g01804 622 ProSiteProfiles PAC domain profile. 212 266 IPR000700 -
Trre15g01804 622 MobiDBLite consensus disorder prediction 1 65 - -
Trre15g01804 622 MobiDBLite consensus disorder prediction 333 349 - -
Trre15g01804 622 ProSiteProfiles PAS repeat profile. 411 484 IPR000014 -
Trre15g01804 622 SMART pac_2 215 257 IPR001610 -
Trre15g01804 622 SMART pac_2 488 530 IPR001610 -
Trre15g01804 622 MobiDBLite consensus disorder prediction 104 125 - -
Trre15g01804 622 MobiDBLite consensus disorder prediction 48 64 - -
Trre15g01804 622 Pfam PAS domain 159 255 IPR000014 -
Trre15g01804 622 Pfam PAS domain 434 526 IPR000014 -
Trre15g01804 622 NCBIfam PAS domain S-box protein 438 526 IPR000014 -
Trre15g01804 622 NCBIfam PAS domain S-box protein 164 255 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01804 Trre-Chr15 14491742 14495786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01804 72 607 AGC Kinase Gene Family AT5G58140 66.000 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01804 K20715 - gmx:100804783 884.789