Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01803 ATGGCGATGCTGTTAAGAAAACTCCGCGATTCAGCATCATCGTTAAAGCAGCGATCCACTACTTCTTCTTCATCATCATCACGCTCGAATCCTTCTCATTCTCCTCCTCTTCCTTTAGGTTCATTCGATTCACTCCCTACTGAATTACTCCTCAAAATCATACGATTATTGGAACCTAAACAAGCAGCTAAAATCTGCATCGTTTGCAAATCATGGCGATCTCTCGTTTCCGATAACGAACTCTGGGCTTATTTTCTTCAAACTTATCAACCTCTACACTTTGATTCTATTCTCTTCTCTGAAATAAACTTAACCTCCGGTTATCCTCTTCCGATCTTTGTTAATCAGACGCCACGCGTGTCGTTTAAGCAGGTTTATGGCCAAAGGGAGCGAGTTCCTCCTGCTGTTATCATTGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGACGAGCGTCCAATGGGGCGAACAGCTACCTTTTTGGAATTCGGTAATGTAGAAACGCCAATATATACTAGGCTTCGGCATTTTTTTGCGACTGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAACCTGTTGTTGTTTCGTTACCATTATGCCACTATGATGATACCAATTCAGCCAAAGCATCAAGACATCAGCTTAAAGAAGCAATATGCTCTGCACTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTCTATGCTGCAAATCAAACTTCCGGAATAGTTGTAAATATAGGCTTTCAAGTTACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTCGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAAAAAATGCAACAAAACAATTTATATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAATCTATGCTATGTTGCCTATGACTATGAAGCTGAGTTATTGAAAGATACACATGCATCATTTGAAGCTATTGAAGGGAAGTTTACACTCTCAAAAGAGAGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGATGCGAGCAATGAGTTTGCACCATGCCGTAGCTCTCTGTATGGACCATTGCCATTCTGCGGAATTAGCAGGCGGCAGTGATTGGTTCAAGACCATTGTCTTATCCGGAGGGTCTGCATGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACGTCCTCCTTATATGTCGAATGGATTCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCCGCCCCCTGGTGTTCAACAAAGAAGCAGTTCCGTCAGAATAAACTCAACCGAATCTGGTGA 1416 0.4273 MAMLLRKLRDSASSLKQRSTTSSSSSSRSNPSHSPPLPLGSFDSLPTELLLKIIRLLEPKQAAKICIVCKSWRSLVSDNELWAYFLQTYQPLHFDSILFSEINLTSGYPLPIFVNQTPRVSFKQVYGQRERVPPAVIIDGGSGYCKFGWSKDERPMGRTATFLEFGNVETPIYTRLRHFFATVYGRMKVKPSSQPVVVSLPLCHYDDTNSAKASRHQLKEAICSALFDMNVPAVCALNQATLALYAANQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLYTVRTLKENLCYVAYDYEAELLKDTHASFEAIEGKFTLSKERFQTGEILFQPRLAGMRAMSLHHAVALCMDHCHSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLRPPYMSNGFRVIPPPHGADTAWFGAKLIGSLSTFPAPWCSTKKQFRQNKLNRIW 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01803 471 Gene3D - 240 437 - -
Trre15g01803 471 Pfam Actin 214 458 IPR004000 -
Trre15g01803 471 MobiDBLite consensus disorder prediction 1 39 - -
Trre15g01803 471 SUPERFAMILY Actin-like ATPase domain 134 255 IPR043129 -
Trre15g01803 471 CDD NBD_sugar-kinase_HSP70_actin 136 280 - -
Trre15g01803 471 Gene3D Actin; Chain A, domain 4 283 365 - -
Trre15g01803 471 SMART fbox_2 45 85 IPR001810 GO:0005515
Trre15g01803 471 Pfam F-box-like 43 83 IPR001810 GO:0005515
Trre15g01803 471 SUPERFAMILY F-box domain 30 102 IPR036047 GO:0005515
Trre15g01803 471 ProSiteProfiles F-box domain profile. 39 85 IPR001810 GO:0005515
Trre15g01803 471 MobiDBLite consensus disorder prediction 14 37 - -
Trre15g01803 471 Gene3D - 32 133 - -
Trre15g01803 471 SMART actin_3 133 471 IPR004000 -
Trre15g01803 471 Gene3D - 136 463 - -
Trre15g01803 471 PANTHER ACTIN 174 460 IPR004000 -
Trre15g01803 471 SUPERFAMILY Actin-like ATPase domain 250 459 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01803 Trre-Chr15 14479762 14486885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01803 182 465 Cytoskeleton Gene Families AT5G09810 32.770 3.41e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01803 K16616 - gmx:100804254 706.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01803 15 14479762 14486885 Trre15g01803 15 14479762 14486885 ECH