Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01801 ATGAGTTCGTTCTCCATTACGAGGAAAAAGACACCGTTTCAGAAGCATAGAGAAGAGGAGGAAGCAAAGAAAAAGAGAGCGGAAGATGAGACTGCTCGCCTGTATGCTGAATTTGTAGAGTCGTTTCAAGGGGATAACGCTCCTGGGTCAAAGACTTTTGTTCGGGGAGGAACAATTAATCCCAATGATAAATTGAAAGATGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGTGCCATCTTTTATACCACCTCCATTGGCAACAAAGGGGAAAGAACCTGAAAGAAAAAAAGAGGAAGAAAAGCCAAAGGAAAAAGAGAAAGGAAAATCAAGGAACATTGATCATTTTATGGAGGAGTTAAAGCAAGAGCAAGAGATGAGGGAGAGACGAAATCAAGACCGTGAACAATGGCGTGATGGGCGTCCTGGAGAGCATTCTATTTCCAGTCGTTTTGATGAACTGCCTGACGATTTTGATCCTAGTGGAAAACTTCCAGGATCATTTGATGACGGTGATCCACAAACTACAAATCTTTACGTTGGAAATCTCTCACCCCAGGTTGACGAAAATTTTCTTCTGCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGAACAGAGGAGGAGCGAAGGCGACAAAGAAACTGTGGTTTTGTTGCATTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTTGTGGTTTATGAGTACGAATTGAAAATTGGATGGGGAAAGTCCGTTGCCCTCCCATCACAAGCATTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAACACTGTTATCTTGTCTGGCCCATCAGGTCCACCAGTAACATCAGTGCCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTAAGACATGTAATTGATACAATGGCTTTGTATGTCTTGGATGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGGCGTGGAAACCCTCTTTTCAATTTCTTGTTTGTTCTTGGTTCAAAGGAGCATACCTACTATGTTTGGAGACTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGAACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCACATTACCAATAGCCAAAAGTCCAGAACATGACAAAGAATCTGGCTCCACACATGCTGCTGGAAGAAGCAGGCGTGTAGAACCTGAAAGAACACTGACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAGATAAAGGGGGCCATGGGATTTTCTTTGGATAACGCTGATGCAGCTGGCGAGATAGTTGAAGTGTTGACAGAATCCTTGACACTTAAAGAAACCCCAATTCCTACGAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCATATCGCACCAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTTAAGGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCTACTTTCCTTAGACCTGGGAACTCTGGTGTCATACCGTTCCACTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAGATCACTTCTGACGATGCTGTTGTTGGTAGCAAGACCGACCAAGATGCTGCACTGGCAATGGGTCGAGGAGCTGCAACGAGAGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAACGACGATGTCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCGGAAAAGCAAAGAGGTTATGAACTGGATGATGAATTAAAATATCCCCCCAACCAACCAAGTTCAGGGAAATATTCAAGTAGTCGGCGAGAAACAAGTGCAGAGCCTGAACCAATAGGATTGTCTGGATTGAATCAATACGGAGATGAAGATATGCAAGGCAAAGGTTTTACACCTTTAGCGCCAACCCTTCCTATTCCACAGCCTGAACTTAAAGCCTTCACAAAAAAAGAGAAGAATGATCTAGTTTTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAGGGAAAGGTAAAAATCTTGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGGTGATGGCCTTATTAAAGCTGATGAATCAGAGGCTGCTGCTGATTCAAGTTTTCCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATCGAGAAGAAAGTTTTGATGCACCGGAAACGGCTGCAAGTAGAGTATGGGTTATCAGATTCTAGTGAAGATGGTCAAGGCAGCAGGAGAACATCTTCTGAGAGAAGGGATAGGCATGATATCTCAAGGAAACGGCACCGCAGCCATAGTCGAAGTCGTAGTCCACATCAGAAACCGTCAAGCAAGGACAGAGATAGAGAACGTGATTTAGAAAGGGAACGAGACAGAAAAAGAGATAGAAGTTATGATTTTGACAGTGATAGAGGAAGAGACCGGCTCAGGGAGAAGAGTGGAAGCAGGGAGAGGGATGATCATGATAAGGATAGAGGCAGGGACAGGGACAGAGACAGGAGAAGACGCGCCAAATAA 2913 0.4418 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYVPSFIPPPLATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKQEQEMRERRNQDREQWRDGRPGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPTLPIAKSPEHDKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKGAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKITSDDAVVGSKTDQDAALAMGRGAATRELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYPPNQPSSGKYSSSRRETSAEPEPIGLSGLNQYGDEDMQGKGFTPLAPTLPIPQPELKAFTKKEKNDLVLPASKWAREDDESDDEQGKGKNLGLSYSSSGSENVGDGLIKADESEAAADSSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVLMHRKRLQVEYGLSDSSEDGQGSRRTSSERRDRHDISRKRHRSHSRSRSPHQKPSSKDRDRERDLERERDRKRDRSYDFDSDRGRDRLREKSGSRERDDHDKDRGRDRDRDRRRRAK 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01801 970 Coils Coil 817 837 - -
Trre15g01801 970 SMART cwf21_2 816 865 IPR013170 -
Trre15g01801 970 SMART rrm1_1 187 263 IPR000504 GO:0003723
Trre15g01801 970 Pfam CID domain 450 578 IPR006569 -
Trre15g01801 970 Pfam Surp module 333 385 IPR000061 GO:0003723|GO:0006396
Trre15g01801 970 PANTHER RNA PROCESSING PROTEIN LD23810P 1 900 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 11 35 - -
Trre15g01801 970 ProSiteProfiles SURP motif repeat profile. 335 378 IPR000061 GO:0003723|GO:0006396
Trre15g01801 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Trre15g01801 970 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Trre15g01801 970 Gene3D - 443 589 IPR008942 -
Trre15g01801 970 Gene3D - 97 269 IPR012677 -
Trre15g01801 970 CDD RRM_SR140 185 268 IPR035009 -
Trre15g01801 970 SUPERFAMILY ENTH/VHS domain 447 584 IPR008942 -
Trre15g01801 970 SMART surpneu2 333 387 IPR000061 GO:0003723|GO:0006396
Trre15g01801 970 MobiDBLite consensus disorder prediction 757 774 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 416 441 - -
Trre15g01801 970 CDD cwf21_RRC1-like 816 865 IPR047491 -
Trre15g01801 970 MobiDBLite consensus disorder prediction 679 736 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 1 180 - -
Trre15g01801 970 Coils Coil 17 37 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 61 80 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 888 903 - -
Trre15g01801 970 Gene3D Surp module 321 390 IPR035967 GO:0003723|GO:0006396
Trre15g01801 970 ProSiteProfiles CID domain profile. 443 588 IPR006569 -
Trre15g01801 970 SMART 558neu5 450 585 IPR006569 -
Trre15g01801 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Trre15g01801 970 MobiDBLite consensus disorder prediction 417 441 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 862 970 - -
Trre15g01801 970 Gene3D - 816 867 - -
Trre15g01801 970 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Trre15g01801 970 MobiDBLite consensus disorder prediction 691 705 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 757 821 - -
Trre15g01801 970 SUPERFAMILY Surp module (SWAP domain) 308 390 IPR035967 GO:0003723|GO:0006396
Trre15g01801 970 MobiDBLite consensus disorder prediction 904 963 - -
Trre15g01801 970 MobiDBLite consensus disorder prediction 99 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01801 Trre-Chr15 14450636 14460784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01801 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 2.45e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01801 K12842 - gmx:100776093 1609.35