Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01790 ATGATGAATAATGTAATAATATATACATATCTTATTGAATTATTATTCAGGGCCTTAAATTCAAACAACTTTACTGGAAAAATACCTCCTTCATTGGGAAAACTCTCCAAGCTTTATTGGTTGGACTTGGCAGAAAATCAGCTTACAGGACCTATCCCAGTTTCAACTTCCACTACCCCTGGCTTAGACCTTCTTTTAAAGGCTAAGCACTTCCATTTCAGTAAGAATCAGCTTTCTGATTCCATTCCTCCAAAACTTTTCAACTCTGACATGAAACTCATACACATATTATTTGATAACAATGATTTAAGTGGAAGTATACCTTCAACAATAGGACTAGTTCAGACAGTTGAGGTTCTTCGGCTCGATCGAAATTTCTTGACAGGAGAAGTTCCTTCAAATCTCAACAACCTTAGTAACATCAATGAATTGAATTTAGCACACAACAATTTGTCAGGTCCTTTGCCAGACTTAACTTCAATGGATACCCTCAACTATGTGGATCTTAGTAAGAACAATTTTGATCCATCAGAAGCTCCAAGTTGGTTAACAACTATACCAACACTTACCACACTTATAATGGAGAATGGATCTCTTGAAGGACCTCTTCCACCAAAACTCTTCAGCCTTCCTCAAATACAGCAAGTGAAACTAAGAAGCAATACATTGAACAATACACTAGACATGGGCGACAACATTTGTCCGCAACTGCAGCTTGTGGATTTACAAGACAATAAGATTTCAACATTCACAGTCGGTTCACAATACAAAAATACATTGATTCTCATAGGAAACCCAGTTTGCAATATTGCTCTCTCTAATACAAATTACTGCAACCTTCAGCAAAAGCCTAAACCGTATTCAACTAGCTTGGTGAAGTGTGGAGCAATAACATGTCCCTCTAAACAAAAACTCAGTCCACAAAGTTGTGAATGTGTTTATCCATATCAAGGAACTTTCCTTTTTAGAGCACCTTTGTTTAGAGAATTGTCTAATATAAGTACTTTTCATTCACTTGAAATGAGCCTTTTTAGTTTCTTTACAAAATTAGCCTTAACACCTGGAGCAGTTTTTTTACAAAATACTTCTTTCAATGATGATGATTATCTTGAAATGCAACTAGCACTCTTTCCACCAACAGGACTATATTTTAAAAGGTCAGAAGTTCAAAGGATCGGATTTTCATTGAGTCATCAAACTTACAAGCCTCCACATGAATTTGGACCTTATTACTTCAAGGCATTTGATTATGCTTTTCCAGATTTGCGCAAAGGAACTACTTTTAGCAGAGGTATTATTATTGCGATAGCAGCTGGGAGCGTATTTCTGGTCTTGTGCCTCATAGGGTCAGTTGTATACGCAATCCTGCAAAAGAAGCGCGCAGAGAAAGCCATCGGAATAAGTAGACCATTTGCATCATGGGCACCAAGTGGTAAGGATAGTGGAGGTGCACCACAATTGAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAATGCACCAATAATTTCTCTGGAAGCAATGAACTAGGCTCTGGTGGCTATGGCAAGGTGTACAAAGGGGTGTTCCCTGATGGAAAAATAGTTGCAATCAAAAGAGCTCAGCAAGGATCAATGCAAGGAGGCCTAGAGTTCAAAAATGAAATCGAGTTACTTTCAAGAGTTCATCACAAGAATCTTGTTAGCCTAGTTGGATTCTGCTTTGAACAAGGAGAACAAATGTTGGTTTATGAATATATCTCCAATGGAATACTTAGGGAGGGTTTGTTAGGGAAATATGGTACTCAACTTGATTGGAAGAGGAGACTCCCAAAGGTTGCAGATTTTGGCTTGTCTAAGCTGCTTTCAGACAGTGAGAAAGGTCATGTTTCAACTCAGGTTAAAGGGACATTGGGCTATCTAGATCCTGAATATTACATGACAACAACTAACCGAAAAGAGTGA 1947 0.3801 MMNNVIIYTYLIELLFRALNSNNFTGKIPPSLGKLSKLYWLDLAENQLTGPIPVSTSTTPGLDLLLKAKHFHFSKNQLSDSIPPKLFNSDMKLIHILFDNNDLSGSIPSTIGLVQTVEVLRLDRNFLTGEVPSNLNNLSNINELNLAHNNLSGPLPDLTSMDTLNYVDLSKNNFDPSEAPSWLTTIPTLTTLIMENGSLEGPLPPKLFSLPQIQQVKLRSNTLNNTLDMGDNICPQLQLVDLQDNKISTFTVGSQYKNTLILIGNPVCNIALSNTNYCNLQQKPKPYSTSLVKCGAITCPSKQKLSPQSCECVYPYQGTFLFRAPLFRELSNISTFHSLEMSLFSFFTKLALTPGAVFLQNTSFNDDDYLEMQLALFPPTGLYFKRSEVQRIGFSLSHQTYKPPHEFGPYYFKAFDYAFPDLRKGTTFSRGIIIAIAAGSVFLVLCLIGSVVYAILQKKRAEKAIGISRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCTNNFSGSNELGSGGYGKVYKGVFPDGKIVAIKRAQQGSMQGGLEFKNEIELLSRVHHKNLVSLVGFCFEQGEQMLVYEYISNGILREGLLGKYGTQLDWKRRLPKVADFGLSKLLSDSEKGHVSTQVKGTLGYLDPEYYMTTTNRKE 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01790 648 PANTHER RECEPTOR-LIKE PROTEIN 55 605 643 - -
Trre15g01790 648 Gene3D Phosphorylase Kinase; domain 1 479 580 - -
Trre15g01790 648 SUPERFAMILY L domain-like 19 268 - -
Trre15g01790 648 Gene3D Ribonuclease Inhibitor 160 271 IPR032675 -
Trre15g01790 648 FunFam Leucine-rich repeat protein kinase family protein 473 580 - -
Trre15g01790 648 Gene3D Ribonuclease Inhibitor 91 159 IPR032675 -
Trre15g01790 648 Gene3D Ribonuclease Inhibitor 9 90 IPR032675 -
Trre15g01790 648 SUPERFAMILY Protein kinase-like (PK-like) 485 643 IPR011009 -
Trre15g01790 648 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Trre15g01790 648 Pfam Protein tyrosine and serine/threonine kinase 509 600 IPR001245 GO:0004672|GO:0006468
Trre15g01790 648 Gene3D Transferase(Phosphotransferase) domain 1 601 647 - -
Trre15g01790 648 FunFam Predicted protein 60 281 - -
Trre15g01790 648 ProSiteProfiles Protein kinase domain profile. 505 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01790 Trre-Chr15 14373787 14378408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01790 10 642 Receptor kinase-like Gene Family AT1G79620 63.662 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Trre15g01790 PK_Tyr_Ser-Thr 3.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01790 - - gmx:100792249 973.77