LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01788	ATGGATGAGGTTAGAGTTGGTGTTAGTAGTTGTAGTAGTGAAGCAGTGCAGGCTCAGTCAAGAGATACAGTTGAGGAGACGGCGGCTTCTTCGTCTTCGGGATGGAGTCCTAGGGAGCTTGCATTTGCTGCTTTTGTGCCGCGGGATAAAGAAGAACAACAAGAAGATGAACGTGTTAATGCTGCTGGGAAGTTCTTGAAGTACCGTGCATTTGTTAGGAGACCTTTGGTGGGACGATTGACCAAGGAAATAGTTGAAACATACCGAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTATTGGAGTGCTTAATGATGGCTATGATAATGCAAACTCGGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTAGCCAAATGCTGGGATTCAGAAACCAACAGTTTTGTTGCTGTCAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCACTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAAAGACATTTGTGCATATGCTTTGAACTGTTGGACACAAATTTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCAATTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTGTTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCTCTGTGAAGCAGGCAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTATTCCTATATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAGTTTGATCTTTTGAGAAGGATGATTGAAATAATTGGAGGACAACCACCTGATTATGTACTACGGGACGCCAAAAACACTAGTAAATTCTTTAAGTGTATAGGGAGTCTCCAAAACATAGAAATAAGTGAGGGTTCCAAAAATGGACGAGTTTATCAAGCATTGACAGAGGAAGAATATGAAGCTAGGGATTTGAAGAAGCCATCAATTGGAAAAGAATATTTTAATAATATGAATCTTGAAGCAATTGTTACAAACTACCCCTACAGGAAAAACCTACCTAAGGAAGATATTGCCAAAGAAAAGCAAACGCGATTGGCTCTTATTGACTTTTTGAGAGGGCTCGTTGAATTTGACCCTGCAAAACGCTGGTCACCATTCCAGGCCTCAAAACACCCTTTTATAACTGGGGAACCTTTTACTCACCCTTACAGACCTTCCCCTGAGACCCCTTACATTCCGGTAGTTCAAAACATCAAGGTTGATAATCATCCAGGTGGAGGACACTGGTTTGCTGCTGGTTTATCACCAAATGTTGCAGGCAAAAACAGAGCATCTCTTTATAGCAGTCCGCATTTTCAGATGGCACAACATCCACCTGCTAATAGTTATGGCAGCGTAGGAAGCCATGGGAGCTATAATGATGGTGTTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTACTATTCACCTATCGCTCCATCTGGTATGAACATGCACAATCAGGGTGGTGTGTCAATGCTTGGAAATAGTCCTGATGCTCGGAGAAGAATTAAGTACCAACCTGGGAATGGACTGGGTGTAAGTCCATCTGGTGGAAATTTCGCTCCTTTGCCTCTTGGTGCCAGCCCATCTCAATTTACTCCCCCGAGTTCCTATAATCAGATTTCAGTTGGTTCCCCAGGACATTTTGGACCTACATCTCCTGCAAGAGGAGCTTCTCATGGATCACCTTTAGGCAAGACTGCTGCAGCCAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAACTCAAGAAACAGCATTTTCTTCACATTGGCATGGTCAATATCCTGATAGCACAAGCCAAGCAGAGGGAACATCACAAGCTCCTGGCAGTTCACCACAATATATACAATCAAATATTAATCCTGGGAACTGGAAGCAACGCGGAAGTGGAGGGGTTTCTGCTAATCAGAAGATTCCATCCATGGGTGTGCCTGGTTCTAACATGAACTCACAATCAACGGAATTGATTCATGACAATGTGGAGACCGGTTTTTCATTGCCTGATCCTGGAGATTGGGATCCCAATTATAGTGATGAACTACTTCTGCAAGAGGGTGGTTCAGATGAAAGCAGTTTGACAACTGAGTTTGGCAGAAGTATGAATCTTGGTTCCATAGAACCGTGGTCTGGATTTGGAAGGTACGACCATCTCTCCAACTCAAGCTCTCCAATAACCATGCATAGACTAAATGGACCGGGTCAAACATTTTCTACTGTAGAGATGGGTAGTCCCCCAACACATGAAGCAGCATATATACACTCTATGTCAAAGCCTTTTCATCTCATGCCTCATATTTCACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATATACACATGGTAGACCACCTCAGGGTAGTGACTGGAATCAAATTAAGATTCAGGCTCCTTCTGGTTTCAGCAACATGGGTCCGCGTTCTCCCAGGAATGCCTCATTCACTGGCAATATGTCATGGGGGCGAAGAATGAATCCTCCTACTTCAAGTATTCCTCCTATCTCAAACATACCACCCACAGCCCGTTCAAGAAAAGACTATGCAAGGATAGACTAG	2916	0.4204	MDEVRVGVSSCSSEAVQAQSRDTVEETAASSSSGWSPRELAFAAFVPRDKEEQQEDERVNAAGKFLKYRAFVRRPLVGRLTKEIVETYRICNPQFKYSEDLNPKRFLTSPSIGVLNDGYDNANSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSETNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSIGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSSVKQAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEIIGGQPPDYVLRDAKNTSKFFKCIGSLQNIEISEGSKNGRVYQALTEEEYEARDLKKPSIGKEYFNNMNLEAIVTNYPYRKNLPKEDIAKEKQTRLALIDFLRGLVEFDPAKRWSPFQASKHPFITGEPFTHPYRPSPETPYIPVVQNIKVDNHPGGGHWFAAGLSPNVAGKNRASLYSSPHFQMAQHPPANSYGSVGSHGSYNDGVGLGSSYGSYGESSNMFAYYSPIAPSGMNMHNQGGVSMLGNSPDARRRIKYQPGNGLGVSPSGGNFAPLPLGASPSQFTPPSSYNQISVGSPGHFGPTSPARGASHGSPLGKTAAASQFNRRKNWGHSGSPQTQETAFSSHWHGQYPDSTSQAEGTSQAPGSSPQYIQSNINPGNWKQRGSGGVSANQKIPSMGVPGSNMNSQSTELIHDNVETGFSLPDPGDWDPNYSDELLLQEGGSDESSLTTEFGRSMNLGSIEPWSGFGRYDHLSNSSSPITMHRLNGPGQTFSTVEMGSPPTHEAAYIHSMSKPFHLMPHISQNSPSRFGHQSVQRYTHGRPPQGSDWNQIKIQAPSGFSNMGPRSPRNASFTGNMSWGRRMNPPTSSIPPISNIPPTARSRKDYARID	971

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01788	971	Gene3D	Transferase(Phosphotransferase) domain 1	224	486	-	-
	Trre15g01788	971	FunFam	Dual specificity tyrosine-phosphorylation-regulated kinase 1A	106	222	-	-
	Trre15g01788	971	MobiDBLite	consensus disorder prediction	10	35	-	-
	Trre15g01788	971	Gene3D	Phosphorylase Kinase; domain 1	108	223	-	-
	Trre15g01788	971	MobiDBLite	consensus disorder prediction	917	971	-	-
	Trre15g01788	971	ProSitePatterns	Protein kinases ATP-binding region signature.	149	172	IPR017441	GO:0005524
	Trre15g01788	971	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	21	488	-	-
	Trre15g01788	971	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	266	278	IPR008271	GO:0004672\|GO:0006468
	Trre15g01788	971	MobiDBLite	consensus disorder prediction	917	950	-	-
	Trre15g01788	971	SUPERFAMILY	Protein kinase-like (PK-like)	137	508	IPR011009	-
	Trre15g01788	971	SMART	serkin_6	143	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01788	971	MobiDBLite	consensus disorder prediction	600	753	-	-
	Trre15g01788	971	MobiDBLite	consensus disorder prediction	677	753	-	-
	Trre15g01788	971	MobiDBLite	consensus disorder prediction	642	659	-	-
	Trre15g01788	971	Pfam	Protein kinase domain	143	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01788	971	CDD	PKc_YAK1	143	485	-	-
	Trre15g01788	971	ProSiteProfiles	Protein kinase domain profile.	143	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01788	971	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01788	Trre-Chr15	14334949	14349358	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01788	139	372	MAP Kinase Gene Family	AT3G18040	32.932	2.45e-31	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Trre15g01788		Pkinase	7.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01788	K18670		-	gmx:100792777	1632.85