Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01772 ATGGATTTCACCACAAATCTCAACGACCTTCCACCCAACAAGAGAAAAATCAAACTCATTCAACAACAACAACAACACTCTCTCTTGTTACCCACAAAAAAACGTAAAGAATCTCGAAACACATCACTTTTTACCAATCCACCTTCAACACCATCACCATCTATTTATTCTCTACCCACCAAAAAAAGAGTCTGCGCCCTTCAACCTCACCTTTACCACCACCAGGACACCGTAAGCGATGTTGTTCAACGTATCGATCTCAATGTCGAATACAACCCTGCTCTTCACTCACCAACTCCAACCGAGAAACAAACTCTAAAACAGGACACCAACGATGTTGACCAACATGGTGCTGCTGATGATACTGATGATGATGGGATTTTATGCTGTGTGTGCCAGAGCACAGATGCTAACCCTGAGGACCCAATTGTTTTCTGTGATGGTTGCAATTTAATGGTGCATGCTTCTTGCTATGGAAATCCATTAACAAAACAAATCCCAGAAGGGGATTGGTTTTGTGAACGGTGTCGTTTTATTAAAAACGACACTGATCTAATTCGTTGCTCCCTCTGTCCAAAGACAGAGGGAGCAATGAAACAAACAATAGATGGAAAGTGGGCACATTTGGTGTGTGCTTTACTTGTTCCTGAAGTGTTTTTTGTAGATCCAGAAGGAAGAGATGGGATTGATTGTTCCAAAGTTCCAAAGAAGAGGTGGTTGGAAAAATGCTATGTTTGTGATTGCTGTGATGGGTGTGCTTTGGTTTGTTCTGAACCTAAATGTGGTTTGGGTTTTCATATTACTTGTGGAATCAAAGAGGATCTTTGTATTGAGTATAAAGAAGGGAAAAAAGGTTCTACTGTTGTTGCTGGTTTTTGCAAATCTCACTCTCAACTCTGGGAAAAGCAACAGGTATCAGGGAAATACAAGATTGTTGCAGTTGAAGATAAAAAGTAG 957 0.4065 MDFTTNLNDLPPNKRKIKLIQQQQQHSLLLPTKKRKESRNTSLFTNPPSTPSPSIYSLPTKKRVCALQPHLYHHQDTVSDVVQRIDLNVEYNPALHSPTPTEKQTLKQDTNDVDQHGAADDTDDDGILCCVCQSTDANPEDPIVFCDGCNLMVHASCYGNPLTKQIPEGDWFCERCRFIKNDTDLIRCSLCPKTEGAMKQTIDGKWAHLVCALLVPEVFFVDPEGRDGIDCSKVPKKRWLEKCYVCDCCDGCALVCSEPKCGLGFHITCGIKEDLCIEYKEGKKGSTVVAGFCKSHSQLWEKQQVSGKYKIVAVEDKK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01772 318 CDD PHD_BRPF_JADE_like 128 176 - -
Trre15g01772 318 Pfam PHD-finger 129 177 IPR019787 -
Trre15g01772 318 MobiDBLite consensus disorder prediction 41 57 - -
Trre15g01772 318 SUPERFAMILY FYVE/PHD zinc finger 118 193 IPR011011 -
Trre15g01772 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 183 IPR013083 -
Trre15g01772 318 MobiDBLite consensus disorder prediction 23 57 - -
Trre15g01772 318 ProSiteProfiles Extended PHD (ePHD) domain profile. 185 297 IPR034732 -
Trre15g01772 318 PANTHER PHD FINGER PROTEINS 70 297 - -
Trre15g01772 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 299 IPR013083 -
Trre15g01772 318 MobiDBLite consensus disorder prediction 92 119 - -
Trre15g01772 318 SMART PHD_3 128 177 IPR001965 -
Trre15g01772 318 SMART PHD_3 242 297 IPR001965 -
Trre15g01772 318 ProSiteProfiles Zinc finger PHD-type profile. 126 179 IPR019787 -
Trre15g01772 318 Pfam PHD-zinc-finger like domain 187 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01772 Trre-Chr15 14216950 14218035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01772 18 318 C2H2 Transcription Factor Family AT3G14740 49.530 5.81e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre15g01772 zf-HC5HC2H_2 6.4e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01772 K11380 - gmx:100802652 392.119