Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01761 ATGACTTGTTTTGCTTTCTTATTTGGTAAGAAAGTGTCTTCTGATGTAAGGCGAGATCCTGAAATCATTGAAGGACTTTCCGGCATTCGAATAAAAGTTTATACTTACAAAGAACTAAAAATTGCCTCTGACAATTTCAGCCCGGCTAATAAAATCGGGGAGGGTGGTTTCGGTTCTGTCTATAAGGGTGTGCTAAAAGGTGGGAAGTTAGCCGCTATAAAAGTGCTTTCAACTGAATCAAAACAGGGGGTGAAGGAATTCTTGACTGAGATTAATGTGATTTCAGAAATACAGCATGAAAATTTGGTTATACTATATGGCTGTTGTGTGGAAGGAGATCACCGAATATTAGTTTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACACGATGTAGGATATGTATTGGAGTTGCACGTGGACTTGCTTTTCTTCACGAGGAAGTACAACCCCATATTGTTCACAGGGATATAAAAGCAAGTAATATTCTCCTTGACAAAGATCTCACGCCTAAGATTTCAGATTTTGGTCTTGCAAAACTTATTCCATCATACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAATTGACACGTAAAGCAGATATTTACAGTTTTGGGGTCCTCCTTGTAGAGATAGTCAGTGGGAGATCCAACACAAATGCAAGATTACCAATTGCAGATCAATATATTCTAGAAACGACATGGGAACTTTATGAGCGAAAGGAATTGGTACAGTTGGTAGACATATCACTAAACGGGGGATTTGATGCTGAGGAGGCTTGTAAAATTCTGAAGATTGCACTTCTTTGTACTCAGGATACTCCTAAGCTTCGGCCAACCATGTCTTCTGTCGTCAAAATGCTCACCGGAGAAATGAGTATTGATGAAAGTAAGATAACAAAACCAGGCTTGATTTCAGATGTTATGGACCTTAAAATTAGACAACCTAAAAAACTTAAAGATACGGAGACTACATATTCATACAATGCTTCCTCTGGCTCAGATAGCCAGGGTAATACTACCATATCATTGGCTGCTTCAAGTTCTGCAACAACTTCAAGCTTTACTGTGAAATATGATTAA 1170 0.3915 MTCFAFLFGKKVSSDVRRDPEIIEGLSGIRIKVYTYKELKIASDNFSPANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIQHENLVILYGCCVEGDHRILVYNYLENNSLAQTLLAGGHSNIYFDWQTRCRICIGVARGLAFLHEEVQPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRSNTNARLPIADQYILETTWELYERKELVQLVDISLNGGFDAEEACKILKIALLCTQDTPKLRPTMSSVVKMLTGEMSIDESKITKPGLISDVMDLKIRQPKKLKDTETTYSYNASSGSDSQGNTTISLAASSSATTSSFTVKYD 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01761 389 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01761 389 CDD STKc_IRAK 52 319 - -
Trre15g01761 389 SUPERFAMILY Protein kinase-like (PK-like) 28 317 IPR011009 -
Trre15g01761 389 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01761 389 FunFam cold-responsive protein kinase 1 122 333 - -
Trre15g01761 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Trre15g01761 389 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 358 - -
Trre15g01761 389 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Trre15g01761 389 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Trre15g01761 389 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01761 389 Gene3D Phosphorylase Kinase; domain 1 20 121 - -
Trre15g01761 389 FunFam cold-responsive protein kinase 1 18 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01761 Trre-Chr15 14131036 14134712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01761 5 358 Receptor kinase-like Gene Family AT1G53430 51.397 1.95e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g01761 Pkinase 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01761 - - gmx:100797706 590.882