Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01748 ATGAAACACTGTATTTTGGGTTATGCACTTGTTATTGCTCTTTGTGTTTTAAGCTGTTTGGTTGACTTTTCACAAGCTCAAACTGCAAACGCCACTACAGATCCTTCTGAAGCAAGAGTTCTAAACTCAATATTTAGCAAATGGAGCATAAAAGCTGATCAAACTCAATGGAACATCAGCGGTGAGCTATGCAGTGGAAGAGCCATTGATGACAGTGCCAAAATCGATGACACTGCCTTTGACCCATTCATCAAATGTGATTGTTCCTTTAACAACAAAACTACTTGCCGCATCACCGCAATGAAAGTTTATTCATTGGATGTGGTTGGTGAAATTCCACCAGAGCTATGGACTCTTGTTTATCTCACCAATTTCAGGAACCTTGGCCAAAATTACTTGACGGGGTCTCTACCTCCGGCAATTGCAAATCTGACTCGTATGCAATACATGTCCATTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAGTTGGGAGATCTTACAAAATTGATTGTATTGGGTTTTGGGTCTAATAACTTCTCGGGATCTTTGCCATCTGAACTTGGGAAGTTGGTAAAACTAGAACAACTCTACATGGATAGTTCTGGAGTCAGTGGTCCAATTCCACCCACATTTACAAACCTTAATAATTTGGTGACAGTATGGGCTTCAGACACTGAACTCACAGGCAGAATACCCGACTTCATAGGAAATTGGTCTAAGCTTCAATCCTTGAGGTTTGAGGGTAATTCCTTTGAAGGTCCAATACCCTCATCATTTTCCAATTTGACTTCTTTGACAGAATTGAGAATAAGTGGTCTATCTAATGGAAGCTCCTCATTGGAAATAATAAGGAATATGAAGTCTTTGACAACCTTAGAATTGAGGAATAACAATATTTCTGGTTCTATTCCTCCCGCCTTAGGAGAACTTCAAAATTTGACCCAGCTGGACTTAAGCTTCAATAAAATCTCAGGACAAATTCCTGGATCAATTTTCAATTTGAGTGTGCTCTCTTCCTTGTTTCTTGGAAATAACACACTTAGCGGCACTCTTCCTCAGCAAAAAAGTTCATCTCTTAAAAATATAGACTTGTCATACAATGACCTATCTGGAAGCTTCCCCTCTTGGATAAACGAACTAAATTTACAACTGAACATAGTTGCCAACAACTTGACAATAGTAAATTCAAATATCGGTGGTTTGCCTACTGGGATCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGCACGATATTCTGACTTTGCGATCAAGTGCGGTGGTCCCCAAATTACAGCTATAGATGGAACTGTGTATCAAACAGACAATGAGACACTTGGTCCTGCTACGTACTTTGTTACAGATACAAATAGATGGGCCGTTAGTAATGTTGGAATATTTACCGGGACCACCAATCCTCTGTTCAAAAGTTTTGTTTCTAATCAGTTCACTGGTACTGTGAACTCAGAGCTTTTTCAAACTGCTCGGCTCTCTGCATCATCATTAAGATATTACGGATTGGGGCTACAAAATGGATTTTACAACATTACCCTCCAATTTGCGGAAACAGCCATTCTTGATTCTACCACCTGGAAAAGCCTTGGGCGACGGGTCTTTGATATTTATATTCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGAGAAGCTGGTGGTGTCTCTTACAGAGCTGTTCAAAAGAAATTTAGGTTTCAAGTGAAAGAAAACTATCTCGAGATCCATCTTTTTTGGGCTGGAAAAGGGACTTGCTGCATACCTGGCCAAGGTACTTATGGACCCTTGATTCAAGCCATCAATGCTATCCCAGATTTTGTACCTACTGTCAGCAATAAACCTCCAAGCAGTAAAAATAATAAAGCGGGTCTGATCATTGGAATTATTGTTGGTGTTGGGGCTATTTGCTTACTAGCAATTTTTGCCATTTTCTATATCAATCGGAGAAGAAAATTCTATGATGACAATGAAGACCTTTTAGGCATTGATATAATGCCAAACACTTTCAGCTACTCTGAGTTAAAAAATGCTACAAGTGACTTCAATCGTGACAATAAACTTGGAGAGGGTGGTTTTGGACCTGTTTTTAAGGGGATACTTAATGATGGAAGAGATGTGGCTGTGAAACAATTATCTATAGGATCCCATCAAGGAAAGAGTCAGTTCATAGCTGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATACGGATGTTGTATCGAAGGGAGTAACCGACTACTTGTCTATGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGATTTATTCCTCAATTGGTCAACCCGTTATGATATTTGTATGGGTGTTGCAAGAGGCTTGACATATTTACACGAGGAGTCGCGACTCCGAATTGTCCACCGTGATGTGAAGGCTAGTAATATTCTACTTGACTCTGAGCTTGTCCCAAAAATATCTGATTTTGGATTGGCTAAATTATATGATGATAAAAAAACCCATATAAGCACCCGTGTTGCTGGGACAATTGGATATCTTGCACCGGAGTACGCCATGCGAGGACACCTCACAGAGAAAGCTGATGTTTTTTCCTTTGGTGTTGTGGCTCTCGAGTTGGTTAGTGGTAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAGAAACAGTACAAGTGATCTTATAGATCCTAGACTATCAGAATTCAACAAGGAAGAAGTCCAACGCCTTGTGGGAATAGCACTTTTGTGCACACAAACATCACCAACTTTACGGCCACCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCACTGTAACATCACGGCCCGGATACTTGACTGACTGGAAATTTGACGATGTTAGCAGCATCATGACTGACATTTCAATGAAGGAATCAGATACAAGTAATTACAATTCAATAACAAGTACCAGCATAGTTGGTGGACAACATATTCCTTCACCAAATGATCCTTCTAAATCCATCCTTCATGGGACTATTAGTGAGGGTAGGTAA 3099 0.4005 MKHCILGYALVIALCVLSCLVDFSQAQTANATTDPSEARVLNSIFSKWSIKADQTQWNISGELCSGRAIDDSAKIDDTAFDPFIKCDCSFNNKTTCRITAMKVYSLDVVGEIPPELWTLVYLTNFRNLGQNYLTGSLPPAIANLTRMQYMSIGINALSGELPKELGDLTKLIVLGFGSNNFSGSLPSELGKLVKLEQLYMDSSGVSGPIPPTFTNLNNLVTVWASDTELTGRIPDFIGNWSKLQSLRFEGNSFEGPIPSSFSNLTSLTELRISGLSNGSSSLEIIRNMKSLTTLELRNNNISGSIPPALGELQNLTQLDLSFNKISGQIPGSIFNLSVLSSLFLGNNTLSGTLPQQKSSSLKNIDLSYNDLSGSFPSWINELNLQLNIVANNLTIVNSNIGGLPTGINCLQKNFPCNRGAARYSDFAIKCGGPQITAIDGTVYQTDNETLGPATYFVTDTNRWAVSNVGIFTGTTNPLFKSFVSNQFTGTVNSELFQTARLSASSLRYYGLGLQNGFYNITLQFAETAILDSTTWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSYRAVQKKFRFQVKENYLEIHLFWAGKGTCCIPGQGTYGPLIQAINAIPDFVPTVSNKPPSSKNNKAGLIIGIIVGVGAICLLAIFAIFYINRRRKFYDDNEDLLGIDIMPNTFSYSELKNATSDFNRDNKLGEGGFGPVFKGILNDGRDVAVKQLSIGSHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGSNRLLVYEYLENKSLDQALFGNDLFLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHERNSTSDLIDPRLSEFNKEEVQRLVGIALLCTQTSPTLRPPMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDVSSIMTDISMKESDTSNYNSITSTSIVGGQHIPSPNDPSKSILHGTISEGR 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01748 1032 Gene3D Ribonuclease Inhibitor 34 278 IPR032675 -
Trre15g01748 1032 FunFam Putative LRR receptor-like serine/threonine-protein kinase 278 401 - -
Trre15g01748 1032 FunFam Putative LRR receptor-like serine/threonine-protein kinase 767 970 - -
Trre15g01748 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Trre15g01748 1032 ProSiteProfiles Protein kinase domain profile. 691 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01748 1032 MobiDBLite consensus disorder prediction 1009 1024 - -
Trre15g01748 1032 Pfam Protein tyrosine and serine/threonine kinase 694 957 IPR001245 GO:0004672|GO:0006468
Trre15g01748 1032 Gene3D - 425 614 - -
Trre15g01748 1032 FunFam Leucine-rich repeat receptor-like protein kinase 660 766 - -
Trre15g01748 1032 SUPERFAMILY Protein kinase-like (PK-like) 675 984 IPR011009 -
Trre15g01748 1032 Pfam Leucine Rich repeats (2 copies) 289 326 IPR025875 -
Trre15g01748 1032 FunFam Leucine-rich repeat receptor-like protein kinase 423 614 - -
Trre15g01748 1032 ProSiteProfiles Leucine-rich repeat profile. 314 336 IPR001611 GO:0005515
Trre15g01748 1032 Gene3D Ribonuclease Inhibitor 279 412 IPR032675 -
Trre15g01748 1032 Pfam Malectin domain 425 610 IPR021720 -
Trre15g01748 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 990 - -
Trre15g01748 1032 FunFam Leucine-rich repeat transmembrane protein kinase 35 277 - -
Trre15g01748 1032 SMART serkin_6 691 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01748 1032 MobiDBLite consensus disorder prediction 1009 1032 - -
Trre15g01748 1032 Gene3D Phosphorylase Kinase; domain 1 666 766 - -
Trre15g01748 1032 Gene3D Transferase(Phosphotransferase) domain 1 767 969 - -
Trre15g01748 1032 SUPERFAMILY L domain-like 113 404 - -
Trre15g01748 1032 CDD STKc_IRAK 697 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01748 Trre-Chr15 13992116 14007051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01748 147 1032 Receptor kinase-like Gene Family AT1G56120 62.725 0.0 1144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g01748 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01748 - - mtr:25502389 1696.02