Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01747 ATGAAACACTGTATTTTGGGTTATGCACTTGTTATTGCTCTTTGTGTTTTAAGCTGTTTGGTTGACTTTTCACAAGCTCAAACTGCAAACGCCACTACAGATCCTTCTGAAGCAAGAGTTCTAAACTCAATATTTAGCAAATGGAGCATAAAAGCTGATCAAACTCAATGGAACATCAGCGGTGAGCTATGCAGTGGAAGAGCCATTGATGACAGTGCCAAAATCGATGACACTGCCTTTGACCCATTCATCAAATGTGATTGTTCCTTTAACAACAAAACTACTTGCCGCATCACCGCAATGAAAGTTTATTCATTGGATGTGGTTGGTGAAATTCCACCAGAGCTATGGACTCTTGTTTATCTCACCAATTTGAACCTTGGCCAAAATTACTTGACGGGGTCTCTACCTCCGGCAATTGCAAATCTGACTCGTATGCAATACATGTCCATTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAGTTGGGAGATCTTACAAAATTGATTGTATTGGGTTTTGGGTCTAATAACTTCTCGGGATCTTTGCCATCTGAACTTGGGAAGTTGGTAAAACTAGAACAACTCTACATGGATAGTTCTGGAGTCAGTGGTCCAATTCCACCCACATTTACAAACCTTAATAATTTGGTGACAGTATGGGCTTCAGACACTGAACTCACAGGCAGAATACCCGACTTCATAGGAAATTGGTCTAAGCTTCAATCCTTGAGGTTTGAGGGTAATTCCTTTGAAGGTCCAATACCCTCATCATTTTCCAATTTGACTTCTTTGACAGAATTGAGAATAAGTGGTCTATCTAATGGAAGCTCCTCATTGGAAATAATAAGGAATATGAAGTCTTTGACAACCTTAGAATTGAGGAATAACAATATTTCTGGTTCTATTCCTCCCGCCTTAGGAGAACTTCAAAATTTGACCCAGCTGGACTTAAGCTTCAATAAAATCTCAGGACAAATTCCTGGATCAATTTTCAATTTGAGTGTGCTCTCTTCCTTGTTTCTTGGAAATAACACACTTAGCGGCACTCTTCCTCAGCAAAAAAGTTCATCTCTTAAAAATATAGACTTGTCATACAATGACCTATCTGGAAGCTTCCCCTCTTGGATAAACGAACTAAATTTACAACTGAACATAGTTGCCAACAACTTGACAATAGTAAATTCAAATATCGGTGGTTTGCCTACTGGGATCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGCACGATATTCTGACTTTGCGATCAAGTGCGGTGGTCCCCAAATTACAGCTATAGATGGAACTGTGTATCAAACAGACAATGAGACACTTGGTCCTGCTACGTACTTTGTTACAGATACAAATAGATGGGCCGTTAGTAATGTTGGAATATTTACCGGGACCACCAATCCTCTGTTCAAAAGTTTTGTTTCTAATCAGTTCACTGGTACTGTGAACTCAGAGCTTTTTCAAACTGCTCGGCTCTCTGCATCATCATTAAGATATTACGGATTGGGGCTACAAAATGGATTTTACAACATTACCCTCCAATTTGCGGAAACAGCCATTCTTGATTCTACCACCTGGAAAAGCCTTGGGCGACGGGTCTTTGATATTTATATTCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAGAGAAGCTGGTGGTGTCTCTTACAGAGCTGTTCAAAAGAAATTTAGGTTTCAAGTGAAAGAAAACTATCTCGAGATCCATCTTTTTTGGGCTGGAAAAGGGACTTGCTGCATACCTGGCCAAGGTACTTATGGACCCTTGATTCAAGCCATCAATGCTATCCCAGATTTTGTACCTACTGTCAGCAATAAACCTCCAAGCAGTAAAAATAATAAAGCGGGTCTGATCATTGGAATTATTGTTGGTGTTGGGGCTATTTGCTTACTAGCAATTTTTGCCATTTTCTATATCAATCGGAGAAGAAAATTCTATGATGACAATGAAGACCTTTTAGGCATTGATATAATGCCAAACACTTTCAGCTACTCTGAGTTAAAAAATGCTACAAGTGACTTCAATCGTGACAATAAACTTGGAGAGGGTGGTTTTGGACCTGTTTTTAAGGGGATACTTAATGATGGAAGAGATGTGGCTGTGAAACAATTATCTATAGGATCCCATCAAGGAAAGAGTCAGTTCATAGCTGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATACGGATGTTGTATCGAAGGGAGTAACCGACTACTTGTCTATGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGATTTATTCCTCAATTGGTCAACCCGTTATGATATTTGTATGGGTGTTGCAAGAGGCTTGACATATTTACACGAGGAGTCGCGACTCCGAATTGTCCACCGTGATGTGAAGGCTAGTAATATTCTACTTGACTCTGAGCTTGTCCCAAAAATATCTGATTTTGGATTGGCTAAATTATATGATGATAAAAAAACCCATATAAGCACCCGTGTTGCTGGGACAATTGGATATCTTGCACCGGAGTACGCCATGCGAGGACACCTCACAGAGAAAGCTGATGTTTTTTCCTTTGGTGTTGTGGCTCTCGAGTTGGTTAGTGGTAGGCCAAATTCTGATTCAAGTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAGAAACAGTACAAGTGATCTTATAGATCCTAGACTATCAGAATTCAACAAGGAAGAAGTCCAACGCCTTGTGGGAATAGCACTTTTGTGCACACAAACATCACCAACTTTACGGCCACCAATGTCACGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGAGCACTGTAACATCACGGCCCGGATACTTGACTGACTGGAAATTTGACGATGTTAGCAGCATCATGACTGACATTTCAATGAAGGAATCAGATACAAGTAATTACAATTCAATAACAAGTACCAGCATAGTTGGTGGACAACATATTCCTTCACCAAATGATCCTTCTAAATCCATCCTTCATGGGACTATTAGTGAGGGTAGGTAA 3096 0.4002 MKHCILGYALVIALCVLSCLVDFSQAQTANATTDPSEARVLNSIFSKWSIKADQTQWNISGELCSGRAIDDSAKIDDTAFDPFIKCDCSFNNKTTCRITAMKVYSLDVVGEIPPELWTLVYLTNLNLGQNYLTGSLPPAIANLTRMQYMSIGINALSGELPKELGDLTKLIVLGFGSNNFSGSLPSELGKLVKLEQLYMDSSGVSGPIPPTFTNLNNLVTVWASDTELTGRIPDFIGNWSKLQSLRFEGNSFEGPIPSSFSNLTSLTELRISGLSNGSSSLEIIRNMKSLTTLELRNNNISGSIPPALGELQNLTQLDLSFNKISGQIPGSIFNLSVLSSLFLGNNTLSGTLPQQKSSSLKNIDLSYNDLSGSFPSWINELNLQLNIVANNLTIVNSNIGGLPTGINCLQKNFPCNRGAARYSDFAIKCGGPQITAIDGTVYQTDNETLGPATYFVTDTNRWAVSNVGIFTGTTNPLFKSFVSNQFTGTVNSELFQTARLSASSLRYYGLGLQNGFYNITLQFAETAILDSTTWKSLGRRVFDIYIQGTRVLKDFDIQREAGGVSYRAVQKKFRFQVKENYLEIHLFWAGKGTCCIPGQGTYGPLIQAINAIPDFVPTVSNKPPSSKNNKAGLIIGIIVGVGAICLLAIFAIFYINRRRKFYDDNEDLLGIDIMPNTFSYSELKNATSDFNRDNKLGEGGFGPVFKGILNDGRDVAVKQLSIGSHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGSNRLLVYEYLENKSLDQALFGNDLFLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHERNSTSDLIDPRLSEFNKEEVQRLVGIALLCTQTSPTLRPPMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDVSSIMTDISMKESDTSNYNSITSTSIVGGQHIPSPNDPSKSILHGTISEGR 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01747 1031 Pfam Leucine Rich repeats (2 copies) 288 325 IPR025875 -
Trre15g01747 1031 SUPERFAMILY L domain-like 103 403 - -
Trre15g01747 1031 Gene3D - 424 613 - -
Trre15g01747 1031 Gene3D Phosphorylase Kinase; domain 1 665 765 - -
Trre15g01747 1031 MobiDBLite consensus disorder prediction 1008 1031 - -
Trre15g01747 1031 Gene3D Ribonuclease Inhibitor 34 277 IPR032675 -
Trre15g01747 1031 ProSiteProfiles Protein kinase domain profile. 690 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01747 1031 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 989 - -
Trre15g01747 1031 SMART serkin_6 690 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01747 1031 CDD STKc_IRAK 696 957 - -
Trre15g01747 1031 MobiDBLite consensus disorder prediction 1008 1023 - -
Trre15g01747 1031 FunFam Putative LRR receptor-like serine/threonine-protein kinase 277 400 - -
Trre15g01747 1031 FunFam Putative LRR receptor-like serine/threonine-protein kinase 766 969 - -
Trre15g01747 1031 Pfam Malectin domain 424 609 IPR021720 -
Trre15g01747 1031 Gene3D Transferase(Phosphotransferase) domain 1 766 968 - -
Trre15g01747 1031 Gene3D Ribonuclease Inhibitor 278 408 IPR032675 -
Trre15g01747 1031 FunFam Leucine-rich repeat transmembrane protein kinase 35 276 - -
Trre15g01747 1031 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515
Trre15g01747 1031 SUPERFAMILY Protein kinase-like (PK-like) 674 983 IPR011009 -
Trre15g01747 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Trre15g01747 1031 Pfam Protein tyrosine and serine/threonine kinase 693 956 IPR001245 GO:0004672|GO:0006468
Trre15g01747 1031 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
Trre15g01747 1031 FunFam Leucine-rich repeat receptor-like protein kinase 422 613 - -
Trre15g01747 1031 FunFam Leucine-rich repeat receptor-like protein kinase 659 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01747 Trre-Chr15 13992116 14007051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01747 103 276 Receptor kinase-like Gene Family AT1G56120 25.862 1.74e-10 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g01747 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01747 - - mtr:25502389 1702.18