LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01726	ATGGTTTACATTGAAAAAGGGAAACTTCAAGTTCTGCTTCTTATCTTGTGTGTCTGGTGGAGTACTACTAGTATCCATGTGAAAGCAGAAATTGATAGTATGAAGCCAGGTGATACACTGAATACGACATCGATGTTGTGTTCTAAAGAAGGTACATATTGCATGAATTTTGGCCAAACTCGGTATCTCAAAATATTTTCCAGTACGGGATGGATAGTGTGGATTGCTAATAGAAAACAACCTGTTGATGACGAAAATTCAGCAGTTCTATCATTAGACTACTCTGGTGTACTCAAAATTGAATATCGAAATAAGAAACCAATAATCCTTTACAATTCAACTAAACCTTTTAGCAATAGTACTATTGTTGCCACCTTGTTGGATACAGGTAACTTTAAGTTGCAAGATATTCAAACAAAGACTGTGTTGTGGCAAAGTTTTGATCATCCAACAGATAGTTTGCTCCCTGGGATGAAACTAGGTGTTAATCATAAAACTGGTGAAAAATGGTCACTGGTTTCAAGACTTAGTGAGTCTGTCCTAGCTCCTGGTCCATTCAGGCTTGAGTGGGAACCCAAAAGAAAAGAATTGGTCATTAAGCGTAAAGAAAAGGTTTTTTGGACAAGCGGAGAACTGATGAAAAACGGTACATTTGAGTATATATCTGGTGAAGATTTCAAGTACACAATTGTGTCAAATAATGATGAAGAGTACTTCACATACGAAACTCCAAATGATAACCTTACTGTATGGACTCTATTAGAAACTGGTCAACTGATAAACAGGGAAGGCGATGACATAGCGAGGGCTGATTTGTGTTATGGACATAACACAAATGAAGGGTGCCAAAAGTGGGATGAAGCAGAGATACCAACTTGCAGGAATCCTGGTGATAAGTTTGAAAGCAAGCAAGTTTACGGTAATGAAAATATGGTAAATGATATAACAAATGCAAGTTATGGCGTAAGTGATTGTCAAGCTATTTGCTGGAGTAACTGCAGCTGCTTTGCATTCAAAACCTTATATGATAATGGAACTGGTTGTGTCATCTTGTTATCAACTAAAGTTCTTCACATTTTAAGCAGTGGTGAATACTTATTTTCAGTTCTAGTTAAGAACACTGATCACAAAGGTAACAATAACAAGAAGTGGATATGGATTTGCATTGGAATGGGGACTGTTGTACTAGTTATTAGCCTTTCCATTCTGTTCCGAAAATATGTGCTTCAAGGTCACTTAAGCAATGGAGATGACTTAAAAGTATTTAGCTATTCAACAATAACGGTTGCTACCAATGGTTTTTCATCAGAAAACAAGTTAGGACAGGGTGGCTTTGGACCTGTTTTTAAGGGAATTATACCTTCAGGGCAAGAAGTAGCTGTGAAGAAACTTTCAAAAACTTCTGGACAAGGAATTACTGAATTTAGAAATGAATTGACACTCATTTGTAAGCTTCAGCATACAAATCTTGTTCAGCTGATCGGTCATTGCATTCATGAACAAGAACGGATGTTGATCTATGAGTATATGCCCAACAAAAGCTTGGACTTTTTTTTATTTGATGGCACTAGAAGAAAGTTGCTAGATTGGAACAAACGCTTTAGCATAATAGAAGGAATTGCTCAAGGATTACTATATCTTCACAAATACTCGAGACTCAGAATTATCCACAGAGATTTGAAAGCTAGTAATATTCTCCTTGATGAAAATATGAACCCCAAAATTTCTGATTTTGGTGTAGCAAGAATGTTCACAAAACAAGAAACAGAAGCAAATACCAATAGGATTGTTGGGACATATGGTTATATGTCTCCAGAGTATGCGATGGAAGGAGTTTTTTCTACAAAGTCTGATGTGTATAGTTTCGGAGTATTGCTCCTTGAAATTATCAGTGGTGAAAAAAACAATAGCTTCTACTCTGACGACAGACCACTTAATCTAGTAGGACATGCATGGGAGTTATGGAAAGAAGGTGTGGTTTTTCAATTGGCGGATCCATTACTAAATGAGTCGTTTTCTGAGGATGAGGTGCTAAGATGTGTGCATGCTGGTTTATTATGTGTAGAAGAAAATGCAGATGATCGCCCCACCATGTCCAATGTTATATCAATGTTAACAAACAAAATCAAACCTGATGTTTTGCCTAAGAAACCAGCATACTATGGAGGAACAAGAGTGTTCGAGGAAGAAACGTTTGTTGAAGAATTGGGTGTGGATTCCACATTTGATAACTCTACTTCACATGTACAATTAATATAG	2259	0.3683	MVYIEKGKLQVLLLILCVWWSTTSIHVKAEIDSMKPGDTLNTTSMLCSKEGTYCMNFGQTRYLKIFSSTGWIVWIANRKQPVDDENSAVLSLDYSGVLKIEYRNKKPIILYNSTKPFSNSTIVATLLDTGNFKLQDIQTKTVLWQSFDHPTDSLLPGMKLGVNHKTGEKWSLVSRLSESVLAPGPFRLEWEPKRKELVIKRKEKVFWTSGELMKNGTFEYISGEDFKYTIVSNNDEEYFTYETPNDNLTVWTLLETGQLINREGDDIARADLCYGHNTNEGCQKWDEAEIPTCRNPGDKFESKQVYGNENMVNDITNASYGVSDCQAICWSNCSCFAFKTLYDNGTGCVILLSTKVLHILSSGEYLFSVLVKNTDHKGNNNKKWIWICIGMGTVVLVISLSILFRKYVLQGHLSNGDDLKVFSYSTITVATNGFSSENKLGQGGFGPVFKGIIPSGQEVAVKKLSKTSGQGITEFRNELTLICKLQHTNLVQLIGHCIHEQERMLIYEYMPNKSLDFFLFDGTRRKLLDWNKRFSIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGVARMFTKQETEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKNNSFYSDDRPLNLVGHAWELWKEGVVFQLADPLLNESFSEDEVLRCVHAGLLCVEENADDRPTMSNVISMLTNKIKPDVLPKKPAYYGGTRVFEEETFVEELGVDSTFDNSTSHVQLI	752

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01726	752	Pfam	Protein tyrosine and serine/threonine kinase	437	704	IPR001245	GO:0004672\|GO:0006468
	Trre15g01726	752	Gene3D	-	25	147	IPR036426	-
	Trre15g01726	752	ProSiteProfiles	Bulb-type lectin domain profile.	31	147	IPR001480	-
	Trre15g01726	752	Gene3D	Phosphorylase Kinase; domain 1	404	509	-	-
	Trre15g01726	752	SUPERFAMILY	Protein kinase-like (PK-like)	418	721	IPR011009	-
	Trre15g01726	752	ProSiteProfiles	Protein kinase domain profile.	434	713	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01726	752	Pfam	D-mannose binding lectin	72	175	IPR001480	-
	Trre15g01726	752	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	555	567	IPR008271	GO:0004672\|GO:0006468
	Trre15g01726	752	Gene3D	Transferase(Phosphotransferase) domain 1	510	714	-	-
	Trre15g01726	752	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	510	712	-	-
	Trre15g01726	752	Pfam	PAN-like domain	314	350	IPR003609	-
	Trre15g01726	752	SMART	serkin_6	434	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g01726	752	SUPERFAMILY	alpha-D-mannose-specific plant lectins	71	169	IPR036426	-
	Trre15g01726	752	CDD	STKc_IRAK	440	707	-	-
	Trre15g01726	752	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	125	728	-	-
	Trre15g01726	752	PIRSF	SRK	268	751	IPR024171	GO:0004674
	Trre15g01726	752	PIRSF	SRK	6	272	IPR024171	GO:0004674
	Trre15g01726	752	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	405	509	-	-
	Trre15g01726	752	SMART	blect_4	37	150	IPR001480	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01726	Trre-Chr15	13795362	13800056	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01726	422	741	Receptor kinase-like Gene Family	AT3G45860	56.211	2.25e-124	385

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre15g01726		PK_Tyr_Ser-Thr	3.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01726	-		-	gmx:100820258	855.514