Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01725 ATGATGGAACAATCAAGATTCGACAAACAGCTTCAATGCAATACCATGGAACCTAGAAATGAGGAAATCCAGCCTGGATCTCAGTCAGTAATGCAGGACTATCTGGACAGCATGTATGCTAATAAATCAGATGTTAAACAAGTACGGAATTATTCAATACAAACTGGTGAGGAATTTTCTCTTGAATTTATGAGAGACAGGGTAAATCTCACAAAGCCTGTAATTTCACATGTTGCTGATGCCAATTCTACAACTAATGGTATGGAACCGAAAGGTGCTCTAGGCATCAGTCATGCAGGATTTGAGAATGGCTCCTGCGTTTCTATGCTCCCAACGGTTGATAGAAGTTCAACAGAGTTTAACAGACAGAGTACATGGTTACATGGAGACAGAAGCAATTATGGGTCAATTCGATCAACACCAAGAACACCATTGAATCAAGACAGTGGTCAATTTGGGCGAGTGTATGGTTCTTATGGTGGTTCGGATAGCTCTTCAAGGATGATGAAGTGTCTTTGTAGCTTTGGTGGTAGAATATTACCAAGGCCAAGTGATGGAAAACTAAGGTATGTGGGAGGTCAGACACGAATTCTTCGTCTGAGAAAAGACATATCTTGGCCGGAGCTTAGGCAGAAAGCATTGTTAATCTACAATCTGGTTCATATACTAAAGTATCAACTTCCTGGGGAAGATCTGGATGCTTTGGTATCTGTATCATCTGATGAGGATTTACAGAATATGATGGAGGAGTATAATCTTATAGAAGATAGGGAGCCCCCACAAAAGCTTAGGATTTTTTTGTTTTCAATGAGTGATTTAAAAGATGCTCAGTTCGCTCTCAGCAGCATTGGTGATAATTCTGAGTTCCAATATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAACAACTCAACCCCACTTGGTGTCAGCATTTCAGCCAATGGTATACGTGAATTTGACAAAAAAGCTATCGTAAGGGAGACTAGTAATGTTGCTGTAGAATCTATACGTGTCAGGAATGCTCCCTTGACTAACAAATCTGACACTATATTGGCTACTCCGTCTTCACAGCAAGTATTACCGACGTCTCCAGATGCTTATGAAACTGATCAGCTGGCTTATAGTGATCAAATGATACAATCTGCAGAAATTAGTCGTCAATATGCTGTTCATCATGGCTTTCATCCCTCTCATAACCCTGTTGTTGGCGAGGCTCATATTTCTATGGCTCCTCATCTTTTGAACAATCAACCAGAGATTCTGAATGTAGACCATCCACCTAGTGGAGTACAAATTCAAAAATCTGAACTATCTACCTCACAGGTAGAAACTATAGGGGATAATTCAGGGAAACAAGGGAGTGACCATGGTAACATTCCATCCTTGGAAACCCCAGCCCCATCTCCGCCTCAGCCCTTTGATGATTACTTGAAAAATAATGGTCCTGAAGCATCAACTGCAGTTACCATGCCTGAGGGGCATCTACCTTCGTCCCCTTGCACAAAAAAAGTTCCGCACCAGGATTGTGAAGAGGCCTCTTCTACATCTAGCAGTTCATTTGTTCCTAATTATGTTGATTCCCACTCCAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCAGTTCCCAAAAGAGTTTATTATTCAGAAAGAGCTCCGAGGGAGCAAGTAGAGGTCCTGAACCGATCCTCAAAGTCAGATGATGCACCCAGCTCGCAGTTTCATGCGTCAGATTTGCTTTCCAATATCAAGCCAGAGGGTCCAGTAACAGAATCTGGCAACAACTTGAATGATGGTAGTCTGTTAGATCCAGATGAGAAACCGAGTATTTCTGCAAAGCCCTTTCCCGCAGATGACCACACCGTTGACAATGGGTTTGCCACTCATCAAATGAATAAACTGTTGCTTGATACAAACAACGAGATAAAGTCAAACCTATCTGAGCACATGGATCCTGAGTTGAAGCAAGCTGTACTGAGTAACAAAGGAATGAAAGAGGTGGAAACTAAAGATAACCATATCAAGCCCTTGTTTGATGAAACCGAAAGTAAATGTGGTAAATCAGATCTCCCTGCTCTTCATCATGCTTCCTCTGTTGAGCGCCTTGATGTTATAGCATCTAATCTTCCAGAGATTGATTGGGGTGAGGCCTATGGGAAGGAAGCTAATGATAACCACATGGTGCAAGAACTACCTGTTTCTTTAGGTGGGAACATAACCAACGATGTTTCTCAAGATTTTCCCCCAAATGTTTCCAACCAAGTACAAGGTGACATTCTGATTGATATCGATGATCGATTTCCCCGTGAATTGCTTTCTGATATGTATTCTAAAGCAATACTCCAAGAAGACCCCTCCAGTCTGCACCCACTATCCGCAGACGGGACAGCCTATAGTGTAAATATGGAAAATCACGAACCTAAAAGTTGGTCATACTTTGGAAAGCTGGCACAAGGGCTTGACAATGTTTCTCTTATTGATCAAGATCATCTTGGTTTTTCACATCATGCTACACCTCAAACAACTGATAGTGTTCCTCTAGATCATGAGGATTCCCACCTCAATTTTGATGAAGAAAATCAGGACTTACGTAGAAGGAATGGAACAGAAACCCAACTTAATGACACCAAAACTATGCAGTTCGATGGTATGTTGAAAAATCTAGGAGCACAAGAGTCTGAGTACGAGGATGGGAAATTTGTAACCAAAAATTGTAATTTATCTCCACTTGATCCTTCAGGAAATTTTGATATCGGTTCAGTCCAGGTCATTAAGAATGAAGATCTTGAAGAGTTGAGGGAACTAGGTTCTGGTACATTTGGGACTGTGTATCATGGAAAATGGAGAGGATCAGATGTTGCTATCAAAAGAATAAAGAAGAGCTGCTTCACCGGTCGATCATCTGAGCAAGAGAGACTGACTGCTGAGTTCTGGCGAGAAGCTGACATTCTTTCAAAACTTCATCATCCAAATGTGGTCGCATTTTACGGTGTAGTACAGGATGGACCAGGAGGAACAATGGCTACTGTTACAGAATACATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGTAAAAGGCTGATTATTGCAATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAACATTGTGCATTTCGACTTAAAATGCGACAATTTGCTTGTGAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCAAAAATTAAACGAAATACCTTGGTTACTGGTGGTGTGCGGGGAACTCTACCTTGGATGGCACCAGAGCTCCTTAATGGAAACAGCAACAAGGTCTCGGAAAAGGTTGATGTCTTCTCCTTTGGCATACTGTTATGGGAAATTTTAACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTGCGGCCAACCATTCCAAGCCACTGCGATATCGAATGGAGAACACTGATGGAGCAATGTTGGGCACCGAATCCTGTAGCCAGGCCTTCCTTCACAGAAATTGCAAGTCGCTTGCGCATAATGTCCGCAGCAGCTAGTCAAACTAAGCCACAGGGAAACAAGCCATCTAAATGA 3642 0.4185 MMEQSRFDKQLQCNTMEPRNEEIQPGSQSVMQDYLDSMYANKSDVKQVRNYSIQTGEEFSLEFMRDRVNLTKPVISHVADANSTTNGMEPKGALGISHAGFENGSCVSMLPTVDRSSTEFNRQSTWLHGDRSNYGSIRSTPRTPLNQDSGQFGRVYGSYGGSDSSSRMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWPELRQKALLIYNLVHILKYQLPGEDLDALVSVSSDEDLQNMMEEYNLIEDREPPQKLRIFLFSMSDLKDAQFALSSIGDNSEFQYVVAVNGMDLGSRNNSTPLGVSISANGIREFDKKAIVRETSNVAVESIRVRNAPLTNKSDTILATPSSQQVLPTSPDAYETDQLAYSDQMIQSAEISRQYAVHHGFHPSHNPVVGEAHISMAPHLLNNQPEILNVDHPPSGVQIQKSELSTSQVETIGDNSGKQGSDHGNIPSLETPAPSPPQPFDDYLKNNGPEASTAVTMPEGHLPSSPCTKKVPHQDCEEASSTSSSSFVPNYVDSHSNAIDLSCLHPPPVPKRVYYSERAPREQVEVLNRSSKSDDAPSSQFHASDLLSNIKPEGPVTESGNNLNDGSLLDPDEKPSISAKPFPADDHTVDNGFATHQMNKLLLDTNNEIKSNLSEHMDPELKQAVLSNKGMKEVETKDNHIKPLFDETESKCGKSDLPALHHASSVERLDVIASNLPEIDWGEAYGKEANDNHMVQELPVSLGGNITNDVSQDFPPNVSNQVQGDILIDIDDRFPRELLSDMYSKAILQEDPSSLHPLSADGTAYSVNMENHEPKSWSYFGKLAQGLDNVSLIDQDHLGFSHHATPQTTDSVPLDHEDSHLNFDEENQDLRRRNGTETQLNDTKTMQFDGMLKNLGAQESEYEDGKFVTKNCNLSPLDPSGNFDIGSVQVIKNEDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFTGRSSEQERLTAEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGNSNKVSEKVDVFSFGILLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSHCDIEWRTLMEQCWAPNPVARPSFTEIASRLRIMSAAASQTKPQGNKPSK 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01725 1213 SMART PB1_new 183 270 IPR000270 GO:0005515
Trre15g01725 1213 ProSitePatterns Protein kinases ATP-binding region signature. 937 962 IPR017441 GO:0005524
Trre15g01725 1213 Pfam Protein tyrosine and serine/threonine kinase 932 1194 IPR001245 GO:0004672|GO:0006468
Trre15g01725 1213 Pfam PB1 domain 185 268 IPR000270 GO:0005515
Trre15g01725 1213 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 188 270 - -
Trre15g01725 1213 SUPERFAMILY Protein kinase-like (PK-like) 919 1194 IPR011009 -
Trre15g01725 1213 SUPERFAMILY CAD & PB1 domains 184 273 - -
Trre15g01725 1213 Gene3D Transferase(Phosphotransferase) domain 1 1019 1212 - -
Trre15g01725 1213 PANTHER SERINE-THREONINE PROTEIN KINASE 213 1195 - -
Trre15g01725 1213 CDD PB1_UP2 172 268 - -
Trre15g01725 1213 CDD STKc_MAP3K-like 937 1194 - -
Trre15g01725 1213 PRINTS Tyrosine kinase catalytic domain signature 1121 1143 IPR001245 GO:0004672|GO:0006468
Trre15g01725 1213 PRINTS Tyrosine kinase catalytic domain signature 1013 1026 IPR001245 GO:0004672|GO:0006468
Trre15g01725 1213 PRINTS Tyrosine kinase catalytic domain signature 1165 1187 IPR001245 GO:0004672|GO:0006468
Trre15g01725 1213 PRINTS Tyrosine kinase catalytic domain signature 1050 1068 IPR001245 GO:0004672|GO:0006468
Trre15g01725 1213 MobiDBLite consensus disorder prediction 430 463 - -
Trre15g01725 1213 Gene3D - 187 270 - -
Trre15g01725 1213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1056 1068 IPR008271 GO:0004672|GO:0006468
Trre15g01725 1213 SMART serkin_6 931 1197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01725 1213 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1019 1211 - -
Trre15g01725 1213 Gene3D Phosphorylase Kinase; domain 1 924 1018 - -
Trre15g01725 1213 MobiDBLite consensus disorder prediction 420 524 - -
Trre15g01725 1213 ProSiteProfiles Protein kinase domain profile. 931 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01725 1213 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 924 1018 - -
Trre15g01725 1213 MobiDBLite consensus disorder prediction 584 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01725 Trre-Chr15 13778449 13786719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01725 41 595 MAP Kinase Kinase Kinase AT1G16270 35.843 3.55e-75 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre15g01725 PK_Tyr_Ser-Thr 3.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01725 - - psat:127075466 1843.94