LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01711	ATGTCGGACAGCGGCAGCGGAGACGGTGGTGCCACCGCAGATGGTGTAAGACCATGGAGACTAAACGTGAAGGACTTTAAGTTGCCACGTCATCACCACCATCGCCACCATCATCATCCACATCACCCTCCACGTTCCTTCACATTTAGCGGCCTTGTTCGCAAACCTGAAAAGAATAAACGCAAGGTTGCAGAATACTACAAACAGCAGGAAAGACTCCTTGAAGGATATAATGACATGGATACTATGACTGAAACAGGACTTTTCCCGGGAAGTCTTACCGAGGATGAAATGAAGAAACTAGCAAAGAGTGAGAGAGTAGCAGTTAATGTGTCGAATGCGGTTAACTTTGTACTATTTGCAGCAAAAGTATATGCTTCAATTGAGAGTAGATCATTAGCAGTGATTGCTTCCACTCTTGATTCTCTCTTGGATCTCTTATCAGGGTTCATATTGTGGTTCACTGCCAATGCCATGAAAACACCAAATCATTATCACTATCCAATCGGAAAGAAACGAATGCAGCCGGTGGGTATCATTGTTTTTGCATCAGTGATGGCAACATTGGGGTTGCAGATTTTGATTGAGTCTGCCAGGCAAATTATTTCAAAGATTAAACCGGAAATGGATAATACTGAGCTGAAATGGATGGTTGCGATCATGGTAACCGTGACCGTTGTGAAGTTCATTTTAATGGTTTATTGTCGTAGGTTTACGAACGAAATTGTCAAAGCTTATGCACAAGATCATTGTTTTGATGTTATTACTAACTCAATTGGATTAGCTGCTGCTGTTTTAGCTGTCAAATTCTATTGGTGGATTGATCCATTGGGAGCTATTATTATAGCATTGTACACAATCAACACATGGGTGAAGACAGTGATTGAGAATGTATCATCTCTAATTGGAAGAACAGCACCACCTGATTTTCTAGCAAAATTAACATATTTGATATGGAATCATCATGAAGAAGTTAAACACATAGATACTGTGAGAGCATACACTTTTGGTGCTCATTATTTTGTTGAAGTTGATATTGTGTTGCCAAAAGACATGCCATTAAATCAAGCACACAATATTGGTGAGACACTTCAAGAAAAGCTTGAGCAACTTCCTGAAGTTGAAAGAGCTTTTGTGCACATTGATTTTGAATTTACTCACAGGCCTGAACACAAGATGATGGTTTGA	1188	0.3998	MSDSGSGDGGATADGVRPWRLNVKDFKLPRHHHHRHHHHPHHPPRSFTFSGLVRKPEKNKRKVAEYYKQQERLLEGYNDMDTMTETGLFPGSLTEDEMKKLAKSERVAVNVSNAVNFVLFAAKVYASIESRSLAVIASTLDSLLDLLSGFILWFTANAMKTPNHYHYPIGKKRMQPVGIIVFASVMATLGLQILIESARQIISKIKPEMDNTELKWMVAIMVTVTVVKFILMVYCRRFTNEIVKAYAQDHCFDVITNSIGLAAAVLAVKFYWWIDPLGAIIIALYTINTWVKTVIENVSSLIGRTAPPDFLAKLTYLIWNHHEEVKHIDTVRAYTFGAHYFVEVDIVLPKDMPLNQAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKMMV	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01711	395	FunFam	Metal tolerance protein 11	304	384	-	-
	Trre15g01711	395	SUPERFAMILY	Cation efflux protein cytoplasmic domain-like	306	382	IPR036837	-
	Trre15g01711	395	PANTHER	MITOCHONDRIAL METAL TRANSPORTER 1-RELATED	33	392	-	-
	Trre15g01711	395	Pfam	Dimerisation domain of Zinc Transporter	308	382	IPR027470	-
	Trre15g01711	395	NCBIfam	cation diffusion facilitator family transporter	108	382	IPR002524	GO:0006812\|GO:0008324\|GO:0016020\|GO:0055085
	Trre15g01711	395	Gene3D	Cation efflux protein, cytoplasmic domain	306	383	IPR036837	-
	Trre15g01711	395	SUPERFAMILY	Cation efflux protein transmembrane domain-like	104	303	IPR027469	-
	Trre15g01711	395	MobiDBLite	consensus disorder prediction	30	51	-	-
	Trre15g01711	395	Pfam	Cation efflux family	114	302	IPR002524	GO:0006812\|GO:0008324\|GO:0016020\|GO:0055085
	Trre15g01711	395	Gene3D	Cation efflux protein transmembrane domain	106	301	IPR027469	-
	Trre15g01711	395	MobiDBLite	consensus disorder prediction	30	44	-	-
	Trre15g01711	395	FunFam	Metal tolerance protein 11	108	301	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01711	Trre-Chr15	13667104	13670238	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01711	-		-	gmx:100811575	604.749

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre15g01711	15	13667104	13670238	Trre15g01711	15	13667104	13670238	ECH
	Trre11g03477	11	47361505	47365611	Trre15g01711	15	13667104	13670238	PCT