Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01709 ATGCAGATGGAAAGGATGGGAGAATTTTATGCTAGGAGCGAAAAGATTGCAAAATTGATGTCTTGCAATCTTTGCAACCAACTACTAACTGATGCTACCAAAATCCTCAATTGCTTTCATACTTTTTGCAAGGAGTGCATTTATACCCAAATAAGAGAACAAGAATTGGAATGTTGTCCTGTATGCAGAATTTATTTAGGAGTGAATCCTTTTACAAAAATGAGGCCAGACTTCAATTTGCAAGACATGAGAAACCACCTATTTCCTATTGGAAAAGAGGAGGAGGCACGCAAACACCTCCCTGCTGTCCTCATGCATGCAAGTGGACATAAGCCTAATATGGAAGCTGGATCTAGCAAGCACAAAAATAAGAAAATCAAGAGAGATGTTATTGAAGTTGAAGAAGAAGAAATTTCATCAAGATTTTATCCTAAGGAGGAAACCATATTTGGTGCCGAAAGTATTCTGCCTCAAGCTTACTTCTTTGACTGTGACAATTTACCCCCAAACTATGGGGTTTGGACATTCAAATTGAGTCCTTCTCTAAATAAGGAAGGAAGTCCATCCTTGCCACAAATTACTTCATGTTATGCACAAATGAGGAATCTTAGTGTGCCAATCTCCTACGTTTACAAGTTTTTGAGAAAGAAACTTGGGTTTGAGGTTGAAATTACATGTATGGGGATACCTGTGCTGCCAACAACAACAACAGATGAATCAGTAAAGTTTTGGCTGAATACCAATGACAAAAATGAAGGCACAATAGATGATCGTCTCATAGTTCATCTAAACTATGCTCGGAAGGTTCCATCACCCTCTTTTTGA 825 0.383 MQMERMGEFYARSEKIAKLMSCNLCNQLLTDATKILNCFHTFCKECIYTQIREQELECCPVCRIYLGVNPFTKMRPDFNLQDMRNHLFPIGKEEEARKHLPAVLMHASGHKPNMEAGSSKHKNKKIKRDVIEVEEEEISSRFYPKEETIFGAESILPQAYFFDCDNLPPNYGVWTFKLSPSLNKEGSPSLPQITSCYAQMRNLSVPISYVYKFLRKKLGFEVEITCMGIPVLPTTTTDESVKFWLNTNDKNEGTIDDRLIVHLNYARKVPSPSF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01709 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 111 IPR013083 -
Trre15g01709 274 SUPERFAMILY RING/U-box 16 82 - -
Trre15g01709 274 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 119 268 IPR044807 GO:0004842
Trre15g01709 274 SMART ring_2 22 62 IPR001841 -
Trre15g01709 274 ProSiteProfiles Zinc finger RING-type profile. 22 63 IPR001841 -
Trre15g01709 274 ProSitePatterns Zinc finger RING-type signature. 38 47 IPR017907 -
Trre15g01709 274 Pfam Zinc finger, C3HC4 type (RING finger) 22 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01709 Trre-Chr15 13647143 13651031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01709 7 95 C3H Transcription Factor Family AT2G30580 49.451 1.40e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01709 K16277 - psat:127093598 160.614