Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01707 ATGTTTCAGGGAAAATCGAGAGTCGGAACAACGCGATCCTCAGTAGGTGGCCTATCACGTCCAACCGTGGGTGGTAAAAATTTCAAGGTTTTTTCGGAAAATGACCGGATTAAAGTTGAGGATGGGACCATGACATCTACGAGAGAAGTCGGTGCAGCTTCAAGAAAGAGTGCTATAGAAGCTAACAAAGGGGTTATATCAAATGGTGTCAATAATTCAAAGGGTGACTTCAAAAGCATGGAGAAAAGTAAAGGAGCTTATGGCACTTCTGCAAATATGAAAGCGAGAAAGGCATTGGCTGATGTTACCAATGCTCAAGGAAACTCTACGGCAGCTGCTAAGCGTAATATCTCCAAAATTAAGGTTTCAGCTTGTTCAACTACTAAAACAGTTGGCATCTCTCTGAGGAAATCCTGCACGGTAAGAGAGCAAAGACATTCGGGTCGTGGCGGAGTTCAGTTAGATGCTCCCAATGGAGGTGATCAGAAGAATAATTCAAATGGACGTCAATCAGTTGCCATAAAGGATAGGTTTGCAAGGAAGCCTATGTTACCTACAACCACAAGCATTTCAAGGAAGTCTCTGCCAGTTCCAAGAAGGGTAAACAGGGTTGATATGAATAACACAAAGGAAAACGCTGGAAGTTCTGAAAGAGCTAATGACCAAAGTGGTCTTCCAAGTAAGCTGACAACTGGCAGAAGAGTTAGTTCCCAACTAACAAGGAGCTATCTATTGAAGACTCGAGTTAGTGATGGCTTTATTCAAATGGTTACAAGCAATGCTTACCAAGCATCCTCAAGGAAGTCCACCAAGCCTATTGTTAAGACCACACTCAAGGCTTCTACATCTCAGAGGATTTTAAAATCTAAATCCGTAACAGATGAGAACAAATCAAAACCAACCACTGCAATAGTATCTAAGGATGAGGAAAAAGTTTCTTTGTCTCTTTCCGAGAATAGTTCAGTGGTCATTTCCGATGACGCAAATCAAAAGCATCGACCATCTGAAGGGGAGAGCAGTCTGAAAACAGATTTTTCAGAGTTGATTCCAAGAAAAAGATCCAGCCGTCGGAAATCTTATACAACTTCATTAATGGAAAAATCTAAGATTCTCAAGGAAAATGGTGAAGTTAGAGGGCAGGATAACCTACCAAATATAGATGATGAATGTAATCATCTAGAAGTTTCTGAATACATTGACGATATATATCAGTACTATTGGGTTACCGAGGCACATAGTCAAGCTCTATCAAATTACATGTCAATTCAGACAGAGATTACTCCTCATATGCGGGGAGTATTGGTCAACTGGCTAATTGAGGTACACTTCAAATATGATTTGATGCCCGAGACCCTATATCTGACAGTGACATTGTTGGATCAATATCTTTCCCAAGTGAACATAAAAACAAGTGATATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCGAAGTATGAGGACTTTTGGCATCCAAGGGTAAAAGATTTGATTAGCATCTCAGCCGAGGCGTATACTAGAGATCAAATGCTTGGAATGGAAAAGCTTATTCTTAGAAAATTGAAGTTCCGTCTTAATGCTCCCACTCCTTACGTTTTTATGGTTAGATTTCTCAAGGCTGCACAATCAGATAAGAAGCTTGAACACCTGTCATTCTTTCTCATTGACCTATGCTTAGTTGAATATGAAGCTTTAGCGTTCAAGCCTTCATTACTATGTGCATCAGCTCTCTATGTTGCACGTTGTACCCTGAAAGTAACCCCAACATGGACACCACTACTTCACAAGCATGCGCGCTACGAAGTTTCACAGATCAGGGACTGTGCGGATATGATATTGAAATTCCATAAAGCTGCCGGGAAGGGAAAGTTAAAGGTCGCTTATGAAAAATATTCCAGAAAGGAACTCAGTGGAGTCGCAGCAGTGAAGCCGTTGGAAAGACTTCCCCATTGA 1956 0.411 MFQGKSRVGTTRSSVGGLSRPTVGGKNFKVFSENDRIKVEDGTMTSTREVGAASRKSAIEANKGVISNGVNNSKGDFKSMEKSKGAYGTSANMKARKALADVTNAQGNSTAAAKRNISKIKVSACSTTKTVGISLRKSCTVREQRHSGRGGVQLDAPNGGDQKNNSNGRQSVAIKDRFARKPMLPTTTSISRKSLPVPRRVNRVDMNNTKENAGSSERANDQSGLPSKLTTGRRVSSQLTRSYLLKTRVSDGFIQMVTSNAYQASSRKSTKPIVKTTLKASTSQRILKSKSVTDENKSKPTTAIVSKDEEKVSLSLSENSSVVISDDANQKHRPSEGESSLKTDFSELIPRKRSSRRKSYTTSLMEKSKILKENGEVRGQDNLPNIDDECNHLEVSEYIDDIYQYYWVTEAHSQALSNYMSIQTEITPHMRGVLVNWLIEVHFKYDLMPETLYLTVTLLDQYLSQVNIKTSDMQLVGLTALLLASKYEDFWHPRVKDLISISAEAYTRDQMLGMEKLILRKLKFRLNAPTPYVFMVRFLKAAQSDKKLEHLSFFLIDLCLVEYEALAFKPSLLCASALYVARCTLKVTPTWTPLLHKHARYEVSQIRDCADMILKFHKAAGKGKLKVAYEKYSRKELSGVAAVKPLERLPH 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01707 651 MobiDBLite consensus disorder prediction 158 172 - -
Trre15g01707 651 CDD CYCLIN_CCNB1-like_rpt1 395 524 - -
Trre15g01707 651 SMART cyclin_7 436 520 IPR013763 -
Trre15g01707 651 SMART cyclin_7 533 615 IPR013763 -
Trre15g01707 651 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g01707 651 MobiDBLite consensus disorder prediction 1 27 - -
Trre15g01707 651 MobiDBLite consensus disorder prediction 329 361 - -
Trre15g01707 651 Gene3D - 522 649 - -
Trre15g01707 651 FunFam putative cyclin-B3-1 isoform X3 525 650 - -
Trre15g01707 651 Pfam Cyclin, N-terminal domain 401 527 IPR006671 -
Trre15g01707 651 SUPERFAMILY Cyclin-like 391 527 IPR036915 -
Trre15g01707 651 MobiDBLite consensus disorder prediction 207 237 - -
Trre15g01707 651 CDD CYCLIN_AtCycB-like_rpt2 529 645 - -
Trre15g01707 651 SMART Cyclin_C_2 529 646 IPR004367 -
Trre15g01707 651 FunFam Cyclin N-terminal domain containing 2 416 524 - -
Trre15g01707 651 MobiDBLite consensus disorder prediction 316 361 - -
Trre15g01707 651 SUPERFAMILY Cyclin-like 529 648 IPR036915 -
Trre15g01707 651 Gene3D - 415 521 - -
Trre15g01707 651 PANTHER CYCLINS 344 633 IPR039361 -
Trre15g01707 651 Pfam Cyclin, C-terminal domain 529 643 IPR004367 -
Trre15g01707 651 MobiDBLite consensus disorder prediction 141 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01707 Trre-Chr15 13619898 13627901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01707 23 650 Core Cell Cycle Gene Families AT1G16330 43.594 7.03e-160 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01707 K21777 - tpra:123899654 882.093