Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01705 ATGGTTACTTTCAAGGGAAAATCGAGAGTCGGAACAACGCGATCCTCAGTAGGTGGCCTATCACGTCCAACCGTGGGTGGTAAAAATTTCAAGGTTTTTTCGGAAAATGACCGGATTAAAGTTGAGGATGGGACCATGACATCTACGAGAGAAGTCGGTGCAGCTTCAAGAAAGAGTGCTATAGAAGCTAACAAAGGGGTTATATCAAATGGTGTCAATAATTCAAAGGGTGACTTCAAAAGCATGGAGAAAAGTAAAGGAGCTTATGGCACTTCTGCAAATATGAAAGCGAGAAAGGCATTGGCTGATGTTACCAATGCTCAAGGAAACTCTACGGCAGCTGCTAAGCGTAATATCTCCAAAATTAAGGTTTCAGCTTGTTCAACTACTAAAACAGTTGGCATCTCTCTGAGGAAATCCTGCACGGTAAGAGAGCAAAGACATTCGGGTCGTGGCGGAGTTCAGTTAGATGCTCCCAATGGAGGTTTAAGGGTTTCTTTAGGTGCTCAGAAGAATAGTTCTAATTCAAATGGAGGTCAATCAGTTGCCATAAAGGATAGGATTGCAAGGAGGAAGCAGCCTATATTACCCACAACTTCAAGCACTTCAAGGAAGTCTCTGCCAGTTCCTTTAGGCACAGGTTTAAGGGTTTCTTTAGGTGATCAGAAGAATAATTCAAATGGACGTCAATCAGTTGCCATAAAGGATAGGTTTGCAAGGAAGCCTATGTTACCTACAACCACAAGCATTTCAAGGAAGTCTCTGCCAGTTCCAAGAAGGGTAAACAGGGTTGATATGAATAACACAAAGGAAAACGCTGGAAGTTCTGAAAGAGCTAATGACCAAAGTGGTCTTCCAAGTAAGCTGACAACTGGCAGAAGAGTTAGTTCCCAACTAACAAGGAGCTATCTATTGAAGACTCGAGTTAGTGATGGCTTTATTCAAATGGTTACAAGCAATGCTTACCAAGCATCCTCAAGGAAGTCCACCAAGCCTATTGTTAAGACCACACTCAAGGCTTCTACATCTCAGAGGATTTTAAAATCTAAATCCGTAACAGATGAGAACAAATCAAAACCAACCACTGCAATAGTATCTAAGGATGAGGAAAAAGTTTCTTTGTCTCTTTCCGAGAATAGTTCAGTGGTCATTTCCGATGACGCAAATCAAAAGCATCGACCATCTGAAGGGGAGAGCAGTCTGAAAACAGATTTTTCAGAGTTGATTCCAAGAAAAAGATCCAGCCGTCGGAAATCTTATACAACTTCATTAATGGAAAAATCTAAGATTCTCAAGGAAAATGGTGAAGTTAGAGGGCAGGATAACCTACCAAATATAGATGATGAATGTAATCATCTAGAAGTTTCTGAATACATTGACGATATATATCAGTACTATTGGGTTACCGAGGCACATAGTCAAGCTCTATCAAATTACATGTCAATTCAGACAGAGATTACTCCTCATATGCGGGGAGTATTGGTCAACTGGCTAATTGAGGTACACTTCAAATATGATTTGATGCCCGAGACCCTATATCTGACAGTGACATTGTTGGATCAATATCTTTCCCAAGTGAACATAAAAACAAGTGATATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCGAAGTATGAGGACTTTTGGCATCCAAGGGTAAAAGATTTGATTAGCATCTCAGCCGAGGCGTATACTAGAGATCAAATGCTTGGAATGGAAAAGCTTATTCTTAGAAAATTGAAGTTCCGTCTTAATGCTCCCACTCCTTACGTTTTTATGGTTAGATTTCTCAAGGCTGCACAATCAGATAAGAAGCTTGAACACCTGTCATTCTTTCTCATTGACCTATGCTTAGTTGAATATGAAGCTTTAGCGTTCAAGCCTTCATTACTATGTGCATCAGCTCTCTATGTTGCACGTTGTACCCTGAAAGTAACCCCAACATGGACACCACTACTTCACAAGCATGCGCGCTACGAAGTTTCACAGATCAGGGACTGTGCGGATATGATATTGAAATTCCATAAAGCTGCCGGGAAGGGAAAGTTAAAGGTCGCTTATGAAAAATATTCCAGAAAGGAACTCAGTGGAGTCGCAGCAGTGAAGCCGTTGGAAAGACTTCCCCATTGA 2136 0.411 MVTFKGKSRVGTTRSSVGGLSRPTVGGKNFKVFSENDRIKVEDGTMTSTREVGAASRKSAIEANKGVISNGVNNSKGDFKSMEKSKGAYGTSANMKARKALADVTNAQGNSTAAAKRNISKIKVSACSTTKTVGISLRKSCTVREQRHSGRGGVQLDAPNGGLRVSLGAQKNSSNSNGGQSVAIKDRIARRKQPILPTTSSTSRKSLPVPLGTGLRVSLGDQKNNSNGRQSVAIKDRFARKPMLPTTTSISRKSLPVPRRVNRVDMNNTKENAGSSERANDQSGLPSKLTTGRRVSSQLTRSYLLKTRVSDGFIQMVTSNAYQASSRKSTKPIVKTTLKASTSQRILKSKSVTDENKSKPTTAIVSKDEEKVSLSLSENSSVVISDDANQKHRPSEGESSLKTDFSELIPRKRSSRRKSYTTSLMEKSKILKENGEVRGQDNLPNIDDECNHLEVSEYIDDIYQYYWVTEAHSQALSNYMSIQTEITPHMRGVLVNWLIEVHFKYDLMPETLYLTVTLLDQYLSQVNIKTSDMQLVGLTALLLASKYEDFWHPRVKDLISISAEAYTRDQMLGMEKLILRKLKFRLNAPTPYVFMVRFLKAAQSDKKLEHLSFFLIDLCLVEYEALAFKPSLLCASALYVARCTLKVTPTWTPLLHKHARYEVSQIRDCADMILKFHKAAGKGKLKVAYEKYSRKELSGVAAVKPLERLPH 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01705 711 MobiDBLite consensus disorder prediction 260 297 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 165 240 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 194 208 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 389 421 - -
Trre15g01705 711 FunFam Cyclin N-terminal domain containing 2 476 584 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 218 232 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 1 22 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 166 182 - -
Trre15g01705 711 Pfam Cyclin, N-terminal domain 461 587 IPR006671 -
Trre15g01705 711 SUPERFAMILY Cyclin-like 589 708 IPR036915 -
Trre15g01705 711 Gene3D - 582 709 - -
Trre15g01705 711 FunFam putative cyclin-B3-1 isoform X3 585 710 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 267 297 - -
Trre15g01705 711 CDD CYCLIN_AtCycB-like_rpt2 589 705 - -
Trre15g01705 711 PANTHER CYCLINS 404 693 IPR039361 -
Trre15g01705 711 Gene3D - 475 581 - -
Trre15g01705 711 MobiDBLite consensus disorder prediction 376 421 - -
Trre15g01705 711 Pfam Cyclin, C-terminal domain 589 703 IPR004367 -
Trre15g01705 711 SMART Cyclin_C_2 589 706 IPR004367 -
Trre15g01705 711 SMART cyclin_7 496 580 IPR013763 -
Trre15g01705 711 SMART cyclin_7 593 675 IPR013763 -
Trre15g01705 711 CDD CYCLIN_CCNB1-like_rpt1 455 584 - -
Trre15g01705 711 SUPERFAMILY Cyclin-like 451 587 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01705 Trre-Chr15 13619738 13627901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01705 244 710 Core Cell Cycle Gene Families AT1G16330 52.000 1.37e-156 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01705 K21777 - tpra:123899654 919.072