Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01704 ATGAAGCAGTTACTCACCAAGTCCCTTTCTGTTTGTTCTTTGCCAACCACCCTTCAACAACTTGCTTCCCATCAACCCAAAGGTGTTGCAAAGGTTGTACTAAAGAAAGGGAAGACACAACTCTTTAAGGATGGCAACCCAATGGTATACAGTGGAGCTGTCGATAGAATTATCGGTAGGCCGCCTCCTAAGACTGGCGATATTGTTCTGGTATCAGATGGGACTGAGAAACCAATAGGGCGGGGCTTGTACAACTCGGTTTCTATGTTCTGTGTTCGACTCATGCAGCTTGAAGACGAAGCAACCAGTGATTCAGCATGTGCATTGAACATGGAGAAACTGCTTGAAACAAGAATTGACGCTGCTGTTGAATTGCGTAGAAGGTTGGGTCTTCCTTCTGTCCACACGAATGCATATCGTCTAATCAATAGTGAGGGTGACAGATTATCAGGATTGATAGTTGATGTATTTGGAGACGTAGCTGTAGTAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAATCAGAGATAGAGGCATACATCAGGAAAATCAACTATATCAATCATATAAATTGGAGGCCATCTATTGATATTTTAAAGGAAGACGGAGTTAATGTGTCTGATTCTAAGGAAATGCTTTCATCTACTTGTCCTGAAAGAACAAAGATTATGGAAAATGGAATTGTGTACACAATTTCACTGAAAGGACAGAAGACAGGATTCTATGCAGATCAGCGCGAGAATCGTCAGTTCATATCAGGAATTTCAGATGGCCAAAAGGTTCTTGATCTTTGTTGCTATAGTGGCGGTTTTTCTCTAAATGCAGTGCGTGGAGGTGCTCTAAATGTCACTGGTGTCGACTCATCGCTGCCAGCTCTGGAGCTTGCTAAAGAAAATGTTGTACTTAACAACATTGATCCTGGAAGAATATCCTTTTTGAAAGAAGATGCAACTGAATTCATGAAGGGTGCTCTTCTGAGAAATGAATCTTGGGATATTGTCATTATTGATCCTCCTAAATTGGCACCTTCAAAAAAGGTCCTACATGGTGCGTCTGGTATGTACAGAAATTTGAATTCGTTGGCCATGCAACTTACAAAAAGAGGCGGTCTTCTGATGACCTGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGAATTTTCCCGCGTATCCTGCAGAGTGCAGCATCTACGGCAAAGAGAAAAATCACTGTTCTAAGAGATGCTGGAGCTGCCTGTGATCATCCTATTGATCCATCGTACCCAGAAGGCGCATACCTAACTAACATCCTATTGAGAGTTTCATGA 1305 0.4245 MKQLLTKSLSVCSLPTTLQQLASHQPKGVAKVVLKKGKTQLFKDGNPMVYSGAVDRIIGRPPPKTGDIVLVSDGTEKPIGRGLYNSVSMFCVRLMQLEDEATSDSACALNMEKLLETRIDAAVELRRRLGLPSVHTNAYRLINSEGDRLSGLIVDVFGDVAVVASSAAWVEKYKSEIEAYIRKINYINHINWRPSIDILKEDGVNVSDSKEMLSSTCPERTKIMENGIVYTISLKGQKTGFYADQRENRQFISGISDGQKVLDLCCYSGGFSLNAVRGGALNVTGVDSSLPALELAKENVVLNNIDPGRISFLKEDATEFMKGALLRNESWDIVIIDPPKLAPSKKVLHGASGMYRNLNSLAMQLTKRGGLLMTCSCSGAVTQSGIFPRILQSAASTAKRKITVLRDAGAACDHPIDPSYPEGAYLTNILLRVS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01704 434 CDD PUA_RlmI 30 100 IPR041532 GO:0003723
Trre15g01704 434 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 17 433 - -
Trre15g01704 434 Pfam S-adenosylmethionine-dependent methyltransferase 209 393 IPR019614 GO:0008168
Trre15g01704 434 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 429 IPR029063 -
Trre15g01704 434 SUPERFAMILY PUA domain-like 31 99 IPR015947 -
Trre15g01704 434 CDD RlmI_M_like 114 177 - -
Trre15g01704 434 CDD AdoMet_MTases 260 375 - -
Trre15g01704 434 Gene3D Vaccinia Virus protein VP39 221 434 IPR029063 -
Trre15g01704 434 ProSiteProfiles PUA domain profile. 29 85 - -
Trre15g01704 434 SMART pua_5 30 124 IPR002478 GO:0003723
Trre15g01704 434 Gene3D RNA methyltransferase domain (HRMD) like 111 219 - -
Trre15g01704 434 Gene3D PUA domain 29 100 IPR036974 GO:0003723
Trre15g01704 434 Pfam PUA-like domain 32 95 IPR041532 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01704 Trre-Chr15 13610060 13616170 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01704 - - gmx:100796633 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01704 15 13610060 13616170 Trre15g01704 15 13610060 13616170 ECH