Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01700 ATGATGAACTCTCATGATAGATCCATGTGTGTTCAAGGTGATTCAGGCCTTGTCCTCACCACCGATCCAAAACCACGACTTCGATGGACAGTCGAACTCCATGAACGTTTCGTCGATGCTGTTGCTCAACTTGGAGGGCCTGATAAAGCTACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAGCAATCTATTAAGGATGGTATGAGAGTTTCAGCTTTTGAACTGCAGCGAAATACTGGCAACTCTTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTACACAGAAGATTGCATGAACAACTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCTCAAGGAAAGTACATGCAAAACATATTGGAGAAAGCATATCACACACTTGCAGGAGAAAACATGGCAGCTGCAGCTACAAATTTCAAGGGTATTGGAACTCAAGGAATCCCTAACATGAAAGATTTTGTTTCACCTCTTAATAATTTTCCTCATTTTCAAGACCTTAACATTTGTGGTAGTGATGATCATGATGAACAACTTGAGAGGCCAACCATTGATGGATTTATGCCAAATATTAGTAATGAAAATTTGTTTGTTGAGAAGAAAATTAGGACTAATAACCCTTTTAATGGAAGTGGAAAAGGTCCATTAATTTGGAATGATAATAATAATAATGATCTTAGGCTTCATGATTTGGGAACAACTTCATCATGCATTAGTCCTCAAGATGTTCCTAATTTCAAAGGTGATGACTCATTGGATAGAGGTGATGATATTGAAAGTGATTCTATTAATGTTGAGATTTATGATACAAAGTTGAGTGAAAAGAATTTTGATTCATCTATCAAGCTTGGAATAACAACACCAATGATCAATGCTGTGGCAGCTGGTAGAAGCTCATCACCATTTGGTTGA 1008 0.3869 MMNSHDRSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDGMRVSAFELQRNTGNSSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQNILEKAYHTLAGENMAAAATNFKGIGTQGIPNMKDFVSPLNNFPHFQDLNICGSDDHDEQLERPTIDGFMPNISNENLFVEKKIRTNNPFNGSGKGPLIWNDNNNNDLRLHDLGTTSSCISPQDVPNFKGDDSLDRGDDIESDSINVEIYDTKLSEKNFDSSIKLGITTPMINAVAAGRSSSPFG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01700 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 178 IPR044848 GO:0003700
Trre15g01700 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 79 IPR006447 GO:0003677
Trre15g01700 335 Pfam MYB-CC type transfactor, LHEQLE motif 120 158 IPR025756 -
Trre15g01700 335 Pfam Myb-like DNA-binding domain 27 75 IPR001005 -
Trre15g01700 335 Gene3D - 23 81 - -
Trre15g01700 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 81 IPR017930 -
Trre15g01700 335 FunFam Myb family transcription factor 23 81 - -
Trre15g01700 335 SUPERFAMILY Homeodomain-like 23 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01700 Trre-Chr15 13590694 13593360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01700 6 269 G2-like Transcription Factor Family AT1G79430 60.289 4.60e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre15g01700 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01700 - - gmx:100796268 421.009