Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01673 ATGCCTGATTTACCTCATGTAGTTATGAGTAACAATAGTGTATCAGGAGAAGGTCACAAAATAGAACAAAGTTGTGCAAATGGAAATAGAGAAAATGAAGATATTAGAAATGTGAATAACCAAGAAATAAAAGATGGTTTCACAAATGAAAACAATAGAAATAAACCAGCAACATCACCATCATTTTCATCATCTAGGCCTCAAAAGTTAGAATCACACATGAGGAATATCTCAGAATTTTCAACTATTCCTAGAGCAAGATCAAGTCCAAGAATGATTTCAAAGAGCGGATCGAGTTCACGTAGTGATAGTTTAGAAAGCACAAGTACACCAATATATAAGCCACATACAGGAGGTGATGTGAGATGGGATGCAATCAACTTGGTTTCAAGAGAGTCACATTGTAATCTCAACTTTGGTCATTTTCGGCTTTTGAAGCGTGTCGGTTATGGTGACATCGGAAGTGTTTATCTTGTTGAACTTAAAGGGACAGGAACATTTTATGCCATGAAAGTAATGGATAAGGCTTCACTTGTTAGTCGAAACAAACTTCTTAGAGCACAAACTGAAAGAGAGATTCTTGGACTTCTTGATCACCCTTTCTTGCCAACTTTGTATTCTCATTTCGAAAATGACAAGTATTATTGTTTGGTTATGGAGTTTTGTAGTTGTGGTAGTTTGCATAATCTCAGAATGAAGCAACCAAACAAACATTTCACTGAAAATGCTGCAAGGTTTTATTGTTCAGAGATTCTATTAGCATTGGAGTACCTCCACATGTTAGGAATAGTATACAGAGACTTAAAACCAGAAAATGTTCTAGTCCGTGACGAAGGCCACATAATGCTATCAGATTTCGACTTATCCCTTCGATGTTCGGTTAACCCTACACTCGTCAAGTCCTCCTCCGTACACATAACCACCACCACGACATCCATTGGAATCCTTGATGATGATCATGCCGTACAAGGTTGTATGCAACCATCAAGTTACTTCTTTCCAAAAATCCTCCCATCTAAAAAAAACCGAAAATCAAAATCAGATTTCGGTCTCATCCGTCTTCCAGAATTAATGGCAGAACCAACAAACGTGCGATCAATGTCGTTCGTTGGAACACACGAATATCTTGCACCTGAAATAGTCCGTGGTGAAGGGCACGGTAGTGCTGTTGATTGGTGGACATTTGGGATATTTTTATACGAGCTTTTAACCGGAACAACACCGTTTAAAGGTAACGGAAACCGCGCTACGCTTTTCAATGTTGTAGGACAACCTTTAAGGTTTCCTGACCATCCCTCATGTAGTCCTGTTGCTAGAGATCTTATTAGAGGATTGTTGGTTAAAGAACCTCAAAAAAGATTTGCTTATAAAAGAGGTGCTACCGAGATTAAACAACATCCGTTTTTCGAAGGTGTTAATTGGGCTTTGATTCGAAGTGCTACTCCTCCTATTATACCAGAACCATTTGATTTTAGTCAGTATGTTAGTAAGGAAACAATTGCTGATAAGAAGATTGTTGATATTGTGAGTGATAAAAATAATAGTAAGGTGAAACATGATTCTTCTTATGAAGATTTTGAGTATTTTTAG 1590 0.3755 MPDLPHVVMSNNSVSGEGHKIEQSCANGNRENEDIRNVNNQEIKDGFTNENNRNKPATSPSFSSSRPQKLESHMRNISEFSTIPRARSSPRMISKSGSSSRSDSLESTSTPIYKPHTGGDVRWDAINLVSRESHCNLNFGHFRLLKRVGYGDIGSVYLVELKGTGTFYAMKVMDKASLVSRNKLLRAQTEREILGLLDHPFLPTLYSHFENDKYYCLVMEFCSCGSLHNLRMKQPNKHFTENAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSVHITTTTTSIGILDDDHAVQGCMQPSSYFFPKILPSKKNRKSKSDFGLIRLPELMAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLTGTTPFKGNGNRATLFNVVGQPLRFPDHPSCSPVARDLIRGLLVKEPQKRFAYKRGATEIKQHPFFEGVNWALIRSATPPIIPEPFDFSQYVSKETIADKKIVDIVSDKNNSKVKHDSSYEDFEYF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01673 529 MobiDBLite consensus disorder prediction 1 113 - -
Trre15g01673 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Trre15g01673 529 ProSiteProfiles Protein kinase domain profile. 142 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01673 529 CDD STKc_phototropin_like 141 488 - -
Trre15g01673 529 MobiDBLite consensus disorder prediction 8 22 - -
Trre15g01673 529 FunFam Serine/threonine-protein kinase AGC1-7 362 487 - -
Trre15g01673 529 Gene3D Transferase(Phosphotransferase) domain 1 347 487 - -
Trre15g01673 529 FunFam Serine/threonine-protein kinase D6PK-like 140 225 - -
Trre15g01673 529 FunFam serine/threonine-protein kinase D6PK-like 226 293 - -
Trre15g01673 529 Pfam Protein kinase domain 347 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01673 529 Pfam Protein kinase domain 143 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01673 529 SMART serkin_6 142 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01673 529 MobiDBLite consensus disorder prediction 41 113 - -
Trre15g01673 529 Gene3D Phosphorylase Kinase; domain 1 141 225 - -
Trre15g01673 529 ProSiteProfiles AGC-kinase C-terminal domain profile. 470 529 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre15g01673 529 Gene3D Transferase(Phosphotransferase) domain 1 226 296 - -
Trre15g01673 529 SUPERFAMILY Protein kinase-like (PK-like) 139 497 IPR011009 -
Trre15g01673 529 PANTHER FLIPPASE KINASE 1-RELATED 43 494 - -
Trre15g01673 529 MobiDBLite consensus disorder prediction 24 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01673 Trre-Chr15 13430787 13433288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01673 105 529 AGC Kinase Gene Family AT1G79250 71.175 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre15g01673 Pkinase 4.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01673 - - gmx:100802478 691.034