Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01672 ATGGAAAATCGAATCTACACTTCATCAACAATATCCCCGACCCGATTTTACGACCCGAATACAATGTTCCTCGCTCATTATCGCCGCACCGCCGAAGCTGCCGCCGCTGCTTCCGCTATCCGTTACTCTTCTTCTCTTTCTGATGTCGACATTTGTCCTCCTGGAGTTTCTTCTAGAATCTCCTCTTCTTCTAATCCTTGGGCTAACGCTTTCAATAACACCGCTGCAAATGTTGCCTCTGCTTCACTTGAACTTAAACGCTCTTCTGACGCGCTCTACCATCCAACCATTTTGAATACAATCGGGCAAAACGAAGCTTGGTATACTACAAACTCATTGGCCAAGCGCCCTAGATATGAAACCGGAAGCACTTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAGGGTGGAATTCCAGATTGGAAAGAGGTTCCAAATGTTGTTCCAAGTGAAACTCTTCCTGAGAGACCTGGAGAACCAGATTGTCCATTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAATGTACCCTCAGAAAATCCCGATGTTTCTGGCTTACCAGAGAGGCCACAAGAGCCCCCTTGTGCGTTCTACTTGAAAACTGGAAAATGTAAATATGGTGTTGCATGCAAATTCCATCACCCCAAGGATATCCAGATTCAATTCTCTGATGAATCGAGCCGTACCGTTGAGCAGACACAAACAAATTCTTCTATCTTTGATGGGGCAATAGGAGATACACAACAAACTAAGCCTCTTATATCTCCACTGTTGCATAATAGCAAAGGGCTTCCTGTTAGACTGGGGGAAGTGGATTGTCCGTTCTACATGAAAACTGGAAGTTGCAAGTACGGTGCCAGTTGCCGCTACAATCATCCTGACATGAATGCAATTAATCCACCAATTTCTGCTTTGGCCCCTTCTCTTTTGGGATCCTCGGCAGCTAATCATAACATTGGAGTTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGGATCTCAAATCCAATGACCCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGTCTTGGACAGATTGAATGTGATTACTATATGAAATCTGGCATATGTAAATTTGGGGAAAGATGCAAGTATCATCACCCAATCGACCGCTCAACAGCATCACAGTCAAAACTGCCATCAAATGTTAAACTTACTGCTGCAGGGTTACCCAGAAGAGAGGGTACTGAGATTTGCCCATATTATTTGAAAACTGCCACTTGCAAGTTTGGTGCAACATGCAAGTTTGATCATCCACCACCAGGAGAAGTGATGGAGATAGCCAAGACGCAAGGAACTTCTACAACCAATGGAGGAGAAACAGAGACCAACGCAGATGTCTCTGGTTCTGCTCCGGAACAATAA 1503 0.4418 MENRIYTSSTISPTRFYDPNTMFLAHYRRTAEAAAAASAIRYSSSLSDVDICPPGVSSRISSSSNPWANAFNNTAANVASASLELKRSSDALYHPTILNTIGQNEAWYTTNSLAKRPRYETGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPNVVPSETLPERPGEPDCPFFLKTQKCKFGSRCKFNHPNVPSENPDVSGLPERPQEPPCAFYLKTGKCKYGVACKFHHPKDIQIQFSDESSRTVEQTQTNSSIFDGAIGDTQQTKPLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKYGASCRYNHPDMNAINPPISALAPSLLGSSAANHNIGVINPAASFYQAFDPRISNPMTQVGVTGTIYPQRLGQIECDYYMKSGICKFGERCKYHHPIDRSTASQSKLPSNVKLTAAGLPRREGTEICPYYLKTATCKFGATCKFDHPPPGEVMEIAKTQGTSTTNGGETETNADVSGSAPEQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01672 500 ProSiteProfiles Zinc finger C3H1-type profile. 388 416 IPR000571 GO:0046872
Trre15g01672 500 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872
Trre15g01672 500 SUPERFAMILY CCCH zinc finger 188 209 IPR036855 GO:0046872
Trre15g01672 500 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Trre15g01672 500 SMART c3hfinal6 131 158 IPR000571 GO:0046872
Trre15g01672 500 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Trre15g01672 500 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Trre15g01672 500 SMART c3hfinal6 388 415 IPR000571 GO:0046872
Trre15g01672 500 SMART c3hfinal6 439 466 IPR000571 GO:0046872
Trre15g01672 500 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Trre15g01672 500 PANTHER PROTEIN PHOSPHATASE RELATED 291 347 - -
Trre15g01672 500 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Trre15g01672 500 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Trre15g01672 500 SUPERFAMILY CCCH zinc finger 441 466 IPR036855 GO:0046872
Trre15g01672 500 SUPERFAMILY CCCH zinc finger 388 416 IPR036855 GO:0046872
Trre15g01672 500 Gene3D - 387 481 - -
Trre15g01672 500 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Trre15g01672 500 SUPERFAMILY CCCH zinc finger 132 158 IPR036855 GO:0046872
Trre15g01672 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 441 466 IPR000571 GO:0046872
Trre15g01672 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 251 IPR000571 GO:0046872
Trre15g01672 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 157 IPR000571 GO:0046872
Trre15g01672 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 393 414 IPR000571 GO:0046872
Trre15g01672 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 305 328 IPR000571 GO:0046872
Trre15g01672 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 185 209 IPR000571 GO:0046872
Trre15g01672 500 FunFam Zinc finger CCCH domain-containing protein 37 90 168 - -
Trre15g01672 500 ProSiteProfiles Zinc finger C3H1-type profile. 439 467 IPR000571 GO:0046872
Trre15g01672 500 MobiDBLite consensus disorder prediction 474 500 - -
Trre15g01672 500 SUPERFAMILY CCCH zinc finger 226 252 IPR036855 GO:0046872
Trre15g01672 500 FunFam zinc finger CCCH domain-containing protein 37 386 480 - -
Trre15g01672 500 Gene3D - 170 219 - -
Trre15g01672 500 Gene3D - 91 169 - -
Trre15g01672 500 Gene3D - 220 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01672 Trre-Chr15 13418010 13423874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01672 299 468 C2H2 Transcription Factor Family AT5G18550 34.503 9.35e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre15g01672 zf-CCCH 7.6e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01672 - - pvu:PHAVU_011G180700g 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g01672 15 13418010 13423874 Trre15g01672 15 13418010 13423874 ECH