Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01670 ATGTTGACTTCAACAGAAGCAAGTACACATGCTGCTGGACTTTATATTCCAAAGGAACATGCAGATAGATGCTTCCCCTCACTGGATATGACTGTTCAACCACCAATGCAAGATCTAGTGGTGAAGGACTTGCATGGAATTGAGTGGAATTTTCGACACATTTACTGTGATCATCAGAGAGCTCATTTCCTTACAAGTGGTTGGAGCACGTTCGTAAATTCTAAAAAACTTGTTCCTGGAGATTCATGCATTTTCGTCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCGTCGAGCAATGAAACAACATAGTGATATAGGGAAAACATTGTCTCCACTTGGAGCAATGTGTGTTGCTTCTCATGCTGTCACTACAGGAACTATGTTCCTTGTCCAGTACTACCCTTGGATTGCTCCCTTTGAGTTTATGATCCCTCTGAAAACTTATGTTGAGTCTGTTGAAAGAGACTACTTCATTGGAGCGAGAGTTCGCAATTTGTACGAAGTTGAAGGATATGCAAAAAGATATGGTACAATTGTTGGTAGTGAAGATATTGATCCCATTAGGTGGCCTGGATCTGAATGGAGATGTATCAAGGTGCAATGGGATTCCATACCACCAAATACTTCTACACAACTTGAAAGGGATCTTCCAAGATTAAGGGCTTTTCTAAGGATATTGGGAGTTCAACCAAGGCTGACTATCACTTAG 714 0.4104 MLTSTEASTHAAGLYIPKEHADRCFPSLDMTVQPPMQDLVVKDLHGIEWNFRHIYCDHQRAHFLTSGWSTFVNSKKLVPGDSCIFVRGENGEIGIGIRRAMKQHSDIGKTLSPLGAMCVASHAVTTGTMFLVQYYPWIAPFEFMIPLKTYVESVERDYFIGARVRNLYEVEGYAKRYGTIVGSEDIDPIRWPGSEWRCIKVQWDSIPPNTSTQLERDLPRLRAFLRILGVQPRLTIT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01670 237 Pfam Auxin response factor 120 200 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre15g01670 237 CDD B3_DNA 14 99 IPR003340 GO:0003677
Trre15g01670 237 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 205 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre15g01670 237 Pfam B3 DNA binding domain 8 100 IPR003340 GO:0003677
Trre15g01670 237 SMART B3_2 1 101 IPR003340 GO:0003677
Trre15g01670 237 SUPERFAMILY DNA-binding pseudobarrel domain 9 106 IPR015300 -
Trre15g01670 237 Gene3D - 1 101 IPR015300 -
Trre15g01670 237 Gene3D - 158 216 - -
Trre15g01670 237 ProSiteProfiles B3 DNA-binding domain profile. 1 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01670 Trre-Chr15 13398608 13403982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01670 2 207 B3 DNA Binding Superfamily AT5G62000 50.000 6.66e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre15g01670 B3 2.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01670 - - tpra:123895952 367.081