Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01662 ATGGGCCGTCGTAAAATTCCGATTGCTAGGGTGAAAAACTCCGCCGCGAGGCAAGTTACATTCTCCAAGCGTCGAACAGGGTTATTCAACAAAGCAAATGAACTTGTAACCTTGTGCGGAGCAGAAATTGCCATTATTGTGTTCTCGCCGGGAAATAGGCCTTATTCTTTTGGGCACCCGTGCGTTGAAGCTATTGCATCCAAGATTGTTGAACAAAAGCCGAATCCAAATAATGGCATAGAAAACTCATCTTCTGACATCGACGATTTGAGCCAACAACTTGGTGATGTTTTGGCCAAAATAGATGAAGCTGAAAAGGGAGCTAAGCTCCATGATGAGATCCTTAAAGAGTACAAGAAGGTGGTGCAACTCGCTCAACTTAAGGAGTCATTTATTGAGCTTAAGGATATGATAAAATCACGTATTTGTGATTTAGATATATCAAAGTCTATGCTACTTCTTGCAAAAGAACCAATTATTTGGAATTAA 489 0.407 MGRRKIPIARVKNSAARQVTFSKRRTGLFNKANELVTLCGAEIAIIVFSPGNRPYSFGHPCVEAIASKIVEQKPNPNNGIENSSSDIDDLSQQLGDVLAKIDEAEKGAKLHDEILKEYKKVVQLAQLKESFIELKDMIKSRICDLDISKSMLLLAKEPIIWN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01662 162 Coils Coil 87 107 - -
Trre15g01662 162 PANTHER MADS BOX PROTEIN 3 138 - -
Trre15g01662 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre15g01662 162 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Trre15g01662 162 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Trre15g01662 162 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Trre15g01662 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre15g01662 162 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre15g01662 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre15g01662 162 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre15g01662 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01662 Trre-Chr15 13361350 13361838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01662 1 149 Type I MADS-box Gene Family AT2G24840 36.527 1.14e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre15g01662 SRF-TF 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01662 - - psat:127135568 201.445