Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01659 ATGGATTATGCAGGCAGAGATGTTGTGAAAGATGATATATTCACCCATCTTTGGTTTAAATGTGCTGATAATATATTCATCCCTAAGATTGGGGAGGATGTTGTGTACTTCCCTCAAGGACACATGGAGCAGGTCGCAATATACCATCAACAAGAGCTGGAGGAAATACCAAACTTTTATCTTCCATTTAAAGTTTTATGTACTACTATTGGTGTTCAGTTAAAGGTACATAACACAGATGAGGTTTTCGCTATACCGACATTAATCCCGTTGCAGCAACAAGAGTTAATGGTAGAGGAAAATCAGCCTATTGATGCTAGTCCTAGCCAAATATACTCTTTCACTAAGATGCTGGAAGCAAGTACACATGCTGCTGCACTTTATATTCCAAAGGAACATGCAGAAAGATGCTTCCCCCCACTGGATATGGCTGTTCAAGCACCAATGCAAGATCTAGTGGTCAAGGACTTGCATGGAATTGAGTGGAATTTTCGACACATTTACTGTGATCATCAGAAAGCTCACTTCCTTACAAATGGTTGGAGCACGTTCGTAAATTCTAAAAAACTTGTTCCTGGAGATTCGTGCATTTTTGCCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCTTCGAGCAATGAAACAACATAGTGATATAGGGAAAACATTGTCTCCACTTGGAGCAATGTGTGTTGCTTCTCATGCTGTCTCTACAGGAACTATGTTCCTTGTCCAGTATTACCCTTGGATTGCTCCTTTTGAGTTTATAATCCCTCTGAAAACTTATCTTGAGTCCGTTGAAAGAGACTACTTCATTGGAATGAGGGTGCGTATGCTATCCAAAGTCGAAGGATCTTCCAGCAGATATGGTACAATTGTTGGGAATGAAGATTTTGATCCTATTAGATGGCCTGGATCTGAATGGAGATGTATCAAGGTGCAATGGGATTCCATACCACCAAATACTTTTACACAACTTGAAAGGGTTTGTCCTTGGTGGATTGAGCCTTTGGAATCTCCCAAGATTATTAAGGGCTTTCGTACTCTATCTTTATCAAATGAGGTTATTGGGAGTTCATCCACACCTGAAAATCACATTGTGGATATGGACATGCAAGGTCAAAAACATTACAATACTGGAAATGCTGAAAAATCCCTCTTCATTGGTGCTTTCTTTATATTACTTTGCTGTTTTACATTTGTGATTTTTGCCTTTCGTCCGCTTTTGTAA 1233 0.3958 MDYAGRDVVKDDIFTHLWFKCADNIFIPKIGEDVVYFPQGHMEQVAIYHQQELEEIPNFYLPFKVLCTTIGVQLKVHNTDEVFAIPTLIPLQQQELMVEENQPIDASPSQIYSFTKMLEASTHAAALYIPKEHAERCFPPLDMAVQAPMQDLVVKDLHGIEWNFRHIYCDHQKAHFLTNGWSTFVNSKKLVPGDSCIFARGENGEIGIGILRAMKQHSDIGKTLSPLGAMCVASHAVSTGTMFLVQYYPWIAPFEFIIPLKTYLESVERDYFIGMRVRMLSKVEGSSSRYGTIVGNEDFDPIRWPGSEWRCIKVQWDSIPPNTFTQLERVCPWWIEPLESPKIIKGFRTLSLSNEVIGSSSTPENHIVDMDMQGQKHYNTGNAEKSLFIGAFFILLCCFTFVIFAFRPLL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01659 410 Pfam B3 DNA binding domain 119 212 IPR003340 GO:0003677
Trre15g01659 410 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 377 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre15g01659 410 SMART B3_2 114 214 IPR003340 GO:0003677
Trre15g01659 410 Gene3D - 271 342 - -
Trre15g01659 410 CDD B3_DNA 113 212 IPR003340 GO:0003677
Trre15g01659 410 Gene3D - 111 214 IPR015300 -
Trre15g01659 410 Pfam Auxin response factor 233 313 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre15g01659 410 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Trre15g01659 410 SUPERFAMILY DNA-binding pseudobarrel domain 109 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01659 Trre-Chr15 13324413 13331432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01659 13 344 B3 DNA Binding Superfamily AT5G62000 44.380 7.04e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre15g01659 B3 1.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01659 - - tpra:123888364 557.755