Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g01622 | ATGTTCCAAGATCCTTCAATCAAGCTTTTTGGAAGTGATATTCAAATTCATATTCCCATTAACTCAACAGATTTACACTCTCAGATTCACTCTCTTCCACAACCCATCATTATCATGAATGGACTTGAAGAAGAATCAACTAATGCTGATGTTGGTGTTCCTTTGAATGAAGTTTCTAGCAAACAAGCTAAACCTCAAGAAGATGCTAATGCTTTTCCAAACATGTACGAAACTGGCACTTCGAAACCGGCGACCAAAGCAGTTCATAGAACTAATGAACACACGACTGCCAAAAGAGATAATGACAATCAAGAGAAAGCTTTCAAGAAGCCAGACAAGGTTCTTCCGTGTCCTCGGTGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTATAATGTTAACCAACCAAGACATTTCTGCAAAAAATGTCAGAGGTATTGGACAGCAGGGGGAGCAATTAGGAATGTTCCTATCGGAGCCGGTAAGCGTAGAAATAAACATCCACCTTTGCAGAATTGTCAAGTTCCTGTTACCCTTGATGTTGTACCTGTCATACACACAGATTCCAACACTACTAGTCTCAATGAGGAAGTTCCTCTTAGTGAATCACTAGAAGTGTTAAATCTCAAGGACCATCGAAATATTGAAATCGACTTGCCCACTGTCAAAGAGGATATTGATGAACCTTCTCGCACTTCCACGAGAGCTGCCGAATCCGGCGAAATGGAGCATTCGGAAAATGGAATAGAGCATGTTGGTTTGACACCACAATACAATGGCTTAATTCCTTTGCATTCACTTCATTATTATTCTGCTCCTCCTTGGACTTGTCAATGGAATCCATGTTGGAATCCTACGGCATTTAAGCCGGATAACATAACTTCAAATCCTGCAACCATGATGGCAGTAGAAATACCAATGGCACCTTCATCATATTGGGGTTGTATGCCAAATTGGGTTGGCCAAATGGAAGAATTTAATGGCATTCCATCACCTTCATCTTCGGTTAGCAGCGGCACTTGTTCCGGCAATAGGTCACCAACTTTAGGAAAACATTGTAGAGATGGAAGTACACAAGAAGAAGATACAATGAAGCCGAATATTTGGGTGCCTAAAACTATCAGAATTAACGATCCAGAAGAGGCTGCTAAGAGTTCTATATGGTCAACTTTAGCAACAAAATCTAAACAGAACAAACCTGTTATGAAAGGAAGTGTTTTTAAATCATTTGAACCAAGGTCAAATGCAAATTCTCGTGATTTAGACGATAATCAAATCCTTAGAGCAAACCCTGCTGCTTTCTCTCGCTCGGGATCTTTCCAGGAAAGCATGTAA | 1341 | 0.4012 | MFQDPSIKLFGSDIQIHIPINSTDLHSQIHSLPQPIIIMNGLEEESTNADVGVPLNEVSSKQAKPQEDANAFPNMYETGTSKPATKAVHRTNEHTTAKRDNDNQEKAFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKKCQRYWTAGGAIRNVPIGAGKRRNKHPPLQNCQVPVTLDVVPVIHTDSNTTSLNEEVPLSESLEVLNLKDHRNIEIDLPTVKEDIDEPSRTSTRAAESGEMEHSENGIEHVGLTPQYNGLIPLHSLHYYSAPPWTCQWNPCWNPTAFKPDNITSNPATMMAVEIPMAPSSYWGCMPNWVGQMEEFNGIPSPSSSVSSGTCSGNRSPTLGKHCRDGSTQEEDTMKPNIWVPKTIRINDPEEAAKSSIWSTLATKSKQNKPVMKGSVFKSFEPRSNANSRDLDDNQILRANPAAFSRSGSFQESM | 446 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g01622 | 446 | PANTHER | CYCLIC DOF FACTOR 2 | 3 | 445 | IPR045174 | GO:0003700|GO:0006355 | |
Trre15g01622 | 446 | MobiDBLite | consensus disorder prediction | 412 | 446 | - | - | |
Trre15g01622 | 446 | ProSitePatterns | Zinc finger Dof-type signature. | 117 | 153 | IPR003851 | GO:0003677|GO:0006355 | |
Trre15g01622 | 446 | MobiDBLite | consensus disorder prediction | 396 | 446 | - | - | |
Trre15g01622 | 446 | ProSiteProfiles | Zinc finger Dof-type profile. | 115 | 169 | IPR003851 | GO:0003677|GO:0006355 | |
Trre15g01622 | 446 | MobiDBLite | consensus disorder prediction | 87 | 107 | - | - | |
Trre15g01622 | 446 | MobiDBLite | consensus disorder prediction | 332 | 355 | - | - | |
Trre15g01622 | 446 | MobiDBLite | consensus disorder prediction | 228 | 248 | - | - | |
Trre15g01622 | 446 | Pfam | Dof domain, zinc finger | 112 | 169 | IPR003851 | GO:0003677|GO:0006355 | |
Trre15g01622 | 446 | MobiDBLite | consensus disorder prediction | 76 | 107 | - | - | |
Trre15g01622 | 446 | MobiDBLite | consensus disorder prediction | 332 | 363 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g01622 | Trre-Chr15 | 12986279 | 12988742 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g01622 | 80 | 445 | C2C2-Dof Transcription Factor Family | AT5G39660 | 37.659 | 1.38e-61 | 205 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Trre15g01622 | zf-Dof | 3.5e-31 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g01622 | - | - | cam:101489693 | 635.18 |