Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01620 ATGATGGAAACAAAAAACCCATCTGGGAATTCTTCAAAGTTTGAAACTTTCATGCATAATTCATCATCAACAAGAAGTTTTGGTAGGAATTCAATAAGAGAAGTGACTTTTGGTCACTCTGAGTCAAAACCTTCTGTGAGGTATGGTTCAAAGGGTGCTGATTCTGAAGCTTTTAGTATGTCTCAGAAAGAAATCAGTGATGAAGATGCTAGGTTAATTTATGTTGATGATCCTGTTAAGACAAATGAGAGGTTTGAATTTGCAGGGAATTCGGTTCGAACCGGAAAGTACTCTTTTATAACTTTTCTTCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTATTTCCTTATAATTGCTATTCTTAATCAGTTACCTCAACTAGCTGTTTTCGGAAGAGGTGTTTCGATTTTGCCATTGGCTTTTGTTCTTCTTGTTACTGCTGTGAAAGATGCATATGAGGATTGGAGGAGACATAGGTCTGATAAAGTTGAGAACAATAGGTTAGGATTGGTTTTGGTTAATGGTCAATTTATTGAGAAGAAATGGAAGGATATTAGAGTTGGTGAGATCATTAAAATCAATGCAAATGAACCGATTCCTTGTGATTTTGTTTTGTTGTCAACTAGTGACCCTACCGGTGTTGCTTATGTTCAGACACTTAATCTAGATGGTGAGTCTAATTTGAAGACTAGGTATGCCAAACAAGAGACTCAATTCAAGTTTCATGAAAAGGAGAGGTTTAATGGTTTGATTAAGTGTGAGAAACCGAATAGGAATATATATGGATTTCAGGCTACTATGGAGGTTGATGGAAAGAGATTGTCACTTGGTTCCTCGAATATTGTACTTAGAGGGTGTGAACTTAAGAACACTAATTGCGTGGTTGGTGTCGCGGTGTATTGTGGTCGTGAGACTAAAGCTATGCTCAACAACTCAGGAGCTCCGTCTAAGAGGAGTCGTCTCGAGACTCAAATGAACTCTGAGATCATCATGCTTTCTTTTTTCCTTGTAGCTTTGTGTATGGTCACTTCAGTTTGTGCTGCTGTTTGGTTGAAGCGAAACAAGAATGATTTGAATCTATTGCCTTATTATAGGAAATTGGATGTTTCAAAGGGAAAAGAGGAAAGTTATCAATATTATGGATGGGGAGCGGAAATGCTTTTCACGTTCCTCATGTCGGTTATAGTGTACCAGGTTATGATACCGATATCACTGTACATTTCTATGGAGCTTGTCCGTGTTGGTCAGGCTTACTTCATGATCAAAGATTCCAGATTGTACGACGAGGCAACAAATTCAAGATTTCAGTGTAGGGCCTTGAATATCAATGAAGATTTAGGGCAAATTAAATATGTCTTTTCGGACAAAACTGGTACTCTGACTGAGAACAAGATGGAGTTTCAATGCGCGAGTATTTGGGGTGTTGATTACAGTTCCGCAAAAGCCAACCTTGAGAATGAGCAACTTGAATACTCTCTTCAAGTGGAAGGAAAGGTCTTGAAGCCAAAAATGAAGGTGAAAGTTAATCAAGAGCTTTTGAGATTAACAAAAAGTGGATTTACAAACAAAGATGGAAAACGGATTTATGATTTCTTTCTTGCATTGGCAGCATGCAATACTATTGTGCCTCTTGTTATTGACACATCTGACCCTACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCATTGACATATGCTGCCGCTGCCTACGGTTTTATGCTTATTGAACGTACCTCAGGTCACATAGTCATCGATATTCATGGAGAAAGACAAAGGTTCAATGTCTTGGGTTTACATGAATTTGATAGTGATCGGAAAAGGATGTCAGTTATATTGGGGTACAGCGACAATTCGGTTAAACTTTTTGTCAAAGGGGCAGATACATCCATGTTCAGTGTGATTAATAAATCATTGAACACAGACATAATACAAGCAACAGAAACCCATATTCACTCTTATTCATCGGTCGGTTTGAGGACGCTTGTTATTGGGATGCGGGACTTGAATGCTTCAGAGTTTGATCAATGGCACTTTGCCTTTGAGGCAGCAAGTACTTCTATGATCGGTAGGGCTGCTTTGCTTCGCAAAGTTGCTGCCAATGTTGAGAACAATGTTTGCATATTAGGCGCTACCGCTATTGAAGATAAATTGCAGCAAGGTGTGCCAGAATCTATCGAGTCTCTAAGGAAAGCCGGTATTAAAGTATGGGTATTGACTGGTGACAAACAGGAAACGGCCATATCAATAGGCTACTCCTCAAGGCTACTAACAAGCGGCATGACTCAATTTAGAATTAAGAGCAATAACAGAGAGTCGTGTCGAAGACGTTTACAAGATGCACTTCTCATGTCTAGGAAAAATATGGCTGCACCTGAGGTTGGCAACTATTTTGAAAGAAGTTCCGATGTTGTTTCAACTCCGATGGCTTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGACAATGAACTTGAAGAAGAGCTCTTTGAACTTGCACAAAGATGTTCCGTTGTTCTTTGTTGTCGAGTGGCTCCATTGCAAAAGGCTGGGATTGTCTCTCTTGTGAAGAAAAGGACGGCTGACATGACTTTAGCCATTGGAGATGGTGCCAATGATGTATCAATGATCCAAATGGCTGATGTTGGGGTCGGCATCAGTGGTCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGACAGTTTAGGTTTTTAGTACCTCTCTTATTTATACACGGACACTGGAATTACCAACGACTAGGCTACATGGTGTTATACAATTTTTACAGAAATGCCGTCTTTGTCTTAATTCTATTTTGGTATGTGCTTTTCACTGCCTTCACTTTGACAACTGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAATCTACACTGCCGTGCCAACTATTGTTGTTGGTATTCTTGACAAGGATCTTAGTAAAAGGACTCTTCTTGATAATCCTCAACTTTATGGGGCTGGACAAAGACAGAAAGCCTACAACAAAAAATTGTTTTGGTTGACAATGGCTGATACGTTATGGCAAAGTATTGTTGTCTTCTTTGCTCCTCTCTTTGCGTATTGGGGAAGCACCGTAGATATAGCAAGCATAGGGGATCTTTGGACCCTTTCGGTAGTTATTTTGGTCAATTTGCACTTGGCCATGGATGTAATCAGGTGGACTTGGATTACTCATGCATCCATTTGGGGTTCTATCATTTCGACTTTCATATGTGTCATGATTATTGATGCATTACCATCACTCCGTGGTTACTGGGCTATCTTTGATGCTGCAGGCACGGCATTGTTCTGGTTATGTTTGCTTGGAATACTAATAGCAGCATTACTTCCACGATTTGTTGTAAAATTTGTATATCAATATTATTCGCCCGATGATATTCAAATTTCAAGAGAAGTTGAGAAGGCTAGGAATCTAAGGATCAATGGAGATGCACAGATAGAAATGTTTCACATCTCAAATCCACAAAGATAA 3531 0.3928 MMETKNPSGNSSKFETFMHNSSSTRSFGRNSIREVTFGHSESKPSVRYGSKGADSEAFSMSQKEISDEDARLIYVDDPVKTNERFEFAGNSVRTGKYSFITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLGLVLVNGQFIEKKWKDIRVGEIIKINANEPIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQFKFHEKERFNGLIKCEKPNRNIYGFQATMEVDGKRLSLGSSNIVLRGCELKNTNCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSFFLVALCMVTSVCAAVWLKRNKNDLNLLPYYRKLDVSKGKEESYQYYGWGAEMLFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKANLENEQLEYSLQVEGKVLKPKMKVKVNQELLRLTKSGFTNKDGKRIYDFFLALAACNTIVPLVIDTSDPTVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIVIDIHGERQRFNVLGLHEFDSDRKRMSVILGYSDNSVKLFVKGADTSMFSVINKSLNTDIIQATETHIHSYSSVGLRTLVIGMRDLNASEFDQWHFAFEAASTSMIGRAALLRKVAANVENNVCILGATAIEDKLQQGVPESIESLRKAGIKVWVLTGDKQETAISIGYSSRLLTSGMTQFRIKSNNRESCRRRLQDALLMSRKNMAAPEVGNYFERSSDVVSTPMALIIDGTSLVYILDNELEEELFELAQRCSVVLCCRVAPLQKAGIVSLVKKRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFIHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVGILDKDLSKRTLLDNPQLYGAGQRQKAYNKKLFWLTMADTLWQSIVVFFAPLFAYWGSTVDIASIGDLWTLSVVILVNLHLAMDVIRWTWITHASIWGSIISTFICVMIIDALPSLRGYWAIFDAAGTALFWLCLLGILIAALLPRFVVKFVYQYYSPDDIQISREVEKARNLRINGDAQIEMFHISNPQR 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01620 1176 NCBIfam HAD-IC family P-type ATPase 847 962 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre15g01620 1176 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 463 729 IPR023299 GO:0000166
Trre15g01620 1176 SUPERFAMILY Calcium ATPase, transduction domain A 172 311 IPR008250 -
Trre15g01620 1176 NCBIfam phospholipid-translocating P-type ATPase 87 1151 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre15g01620 1176 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 66 1154 - -
Trre15g01620 1176 Gene3D - 713 916 IPR023214 -
Trre15g01620 1176 MobiDBLite consensus disorder prediction 1 29 - -
Trre15g01620 1176 Pfam E1-E2 ATPase 175 414 - -
Trre15g01620 1176 PRINTS P-type cation-transporting ATPase superfamily signature 863 875 - -
Trre15g01620 1176 PRINTS P-type cation-transporting ATPase superfamily signature 457 471 - -
Trre15g01620 1176 PRINTS P-type cation-transporting ATPase superfamily signature 740 750 - -
Trre15g01620 1176 CDD P-type_ATPase_APLT_Dnf-like 89 1036 - -
Trre15g01620 1176 SUPERFAMILY HAD-like 452 931 IPR036412 -
Trre15g01620 1176 SFLD Haloacid Dehalogenase 441 927 - -
Trre15g01620 1176 FunFam Phospholipid-transporting ATPase 561 694 - -
Trre15g01620 1176 Gene3D - 558 691 IPR023299 GO:0000166
Trre15g01620 1176 SFLD p-type atpase 441 927 IPR044492 -
Trre15g01620 1176 SUPERFAMILY Calcium ATPase, transmembrane domain M 88 1143 IPR023298 -
Trre15g01620 1176 Gene3D - 147 314 - -
Trre15g01620 1176 FunFam Phospholipid-transporting ATPase 145 314 - -
Trre15g01620 1176 Pfam Cation transport ATPase (P-type) 565 640 - -
Trre15g01620 1176 Pfam Phospholipid-translocating P-type ATPase C-terminal 904 1143 IPR032630 -
Trre15g01620 1176 Pfam Phospholipid-translocating ATPase N-terminal 73 138 IPR032631 -
Trre15g01620 1176 ProSitePatterns E1-E2 ATPases phosphorylation site. 459 465 IPR018303 -
Trre15g01620 1176 FunFam Phospholipid-transporting ATPase 713 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01620 Trre-Chr15 12973703 12979024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01620 22 1176 Primary Pumps ATPases AT5G04930 69.204 0.0 1689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01620 K14802 - gmx:100784988 1917.12