Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01608 ATGTCCTCTCAAGAACTTGATCATGGGACCAATGGCATCCACTTTTTCAAGATTATTCTTCAATCTACCATTCAACAAGGAAAATTGAAAGTGCCCATAAGAGAAGCTAGTGAAGAATTTGAAGAGAGCGATTGTTCTTTGAAAATGATTGAGAATCCTTTCTCATTGCGGAGTAAAAGACTCAAATCGCCATCACCGTCTTATAACATTTGTAAGAAGATTAAAATCAACTCAAAAGAACAAAAAGAATATCAACATGAGAAGAGAAAAGTCCAAGCACAAGCAAGATATCCTAAATTTAAGGATATCGACAATGCAGGATTTAGTTGTAAAGATCTTAAGGAGAGAAGCATAGTATTGTATGAGAAAGTGAAGAAAAAATTTCACTCTGATAAGGACTTCTTCGCACGTATGATACACAAGACATACATTGAGAGAGATATGCTGGCCATACCAAATGAATTTTCTAATACACATCTACACAGAATGGAAGGAAGAAATGTTACACTTTTTGTTGACCAAGACAGAACATGGAATGTTGATTTAAAGCTCACAATAAATAAACAATTCAGACTTACTAGTGGTTGGAGTAAATTTCGTGCTGACAATAATTTGAAATTTGGTGATGTTTGTGTTTTTACGCTAAACAAATGCAAAGGAACAGTTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAGGACATGAGGGCTCCATATTTTCAAGGGTTGTGA 732 0.3443 MSSQELDHGTNGIHFFKIILQSTIQQGKLKVPIREASEEFEESDCSLKMIENPFSLRSKRLKSPSPSYNICKKIKINSKEQKEYQHEKRKVQAQARYPKFKDIDNAGFSCKDLKERSIVLYEKVKKKFHSDKDFFARMIHKTYIERDMLAIPNEFSNTHLHRMEGRNVTLFVDQDRTWNVDLKLTINKQFRLTSGWSKFRADNNLKFGDVCVFTLNKCKGTVSFQVVIFSLEKDMRAPYFQGL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01608 243 Pfam B3 DNA binding domain 134 225 IPR003340 GO:0003677
Trre15g01608 243 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 45 234 IPR044837 -
Trre15g01608 243 SMART B3_2 134 232 IPR003340 GO:0003677
Trre15g01608 243 SUPERFAMILY DNA-binding pseudobarrel domain 129 230 IPR015300 -
Trre15g01608 243 ProSiteProfiles B3 DNA-binding domain profile. 134 232 IPR003340 GO:0003677
Trre15g01608 243 CDD B3_DNA 134 230 IPR003340 GO:0003677
Trre15g01608 243 Gene3D - 114 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01608 Trre-Chr15 12871612 12873620 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01608 122 226 REM Transcription Factor Family AT4G31690 25.714 1.73e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g01608 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01608 - - tpra:123894507 361.688