Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01607 ATGTCCTCTCAAGAACTTGATCATGGGACCAATGGCATCCACTTTTTCAAGATTATTCTTCAATCTACCATTCAACAAGGAAAATTGAAAGTGCCCATAAGAGAAGCTAGTGAAGAATTTGAAGAGAGCGATTGTTCTTTGAAAATGATTGAGAATCCTTTCTCATTGCGGAGTAAAAGACTCAAATCGCCATCACCGTCTTATAACATTTGTAAGAAGATTAAAATCAACTCAAAAGAACAAAAAGAATATCAACATGAGAAGAGAAAAGTCCAAGCACAAGCAAGATATCCTAAATTTAAGGATATCGACAATGGATTTAGTTGTAAAGATCTTAAGGAGAGAAGCATAGTATTGTATGAGAAAGTGAAGAAAAAATTTCACTCTGATAAGGACTTCTTCGCACGTATGATACACAAGACATACATTGAGAGAGATATGCTGGCCATACCAAATGAATTTTCTAATACACATCTACACAGAATGGAAGGAAGAAATGTTACACTTTTTGTTGACCAAGACAGAACATGGAATGTTGATTTAAAGCTCACAATAAATAAACAATTCAGACTTACTAGTGGTTGGAGTAAATTTCGTGCTGACAATAATTTGAAATTTGGTGATGTTTGTGTTTTTACGCTAAACAAATGCAAAGGAACAGTTTCATTCCAAGTTGTTATTTTCTCTCTAGAAAAGGACATGAGGGCTCCATATTTTCAAGGGTTGTGA 729 0.3429 MSSQELDHGTNGIHFFKIILQSTIQQGKLKVPIREASEEFEESDCSLKMIENPFSLRSKRLKSPSPSYNICKKIKINSKEQKEYQHEKRKVQAQARYPKFKDIDNGFSCKDLKERSIVLYEKVKKKFHSDKDFFARMIHKTYIERDMLAIPNEFSNTHLHRMEGRNVTLFVDQDRTWNVDLKLTINKQFRLTSGWSKFRADNNLKFGDVCVFTLNKCKGTVSFQVVIFSLEKDMRAPYFQGL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01607 242 SUPERFAMILY DNA-binding pseudobarrel domain 128 229 IPR015300 -
Trre15g01607 242 ProSiteProfiles B3 DNA-binding domain profile. 133 231 IPR003340 GO:0003677
Trre15g01607 242 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 233 IPR044837 -
Trre15g01607 242 CDD B3_DNA 133 229 IPR003340 GO:0003677
Trre15g01607 242 SMART B3_2 133 231 IPR003340 GO:0003677
Trre15g01607 242 Gene3D - 113 232 IPR015300 -
Trre15g01607 242 Pfam B3 DNA binding domain 133 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01607 Trre-Chr15 12871612 12873620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01607 121 225 REM Transcription Factor Family AT4G31690 25.714 1.68e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g01607 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01607 - - tpra:123894507 361.303