Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01604 ATGATTGAGTTAGATTATCATTGTTTGAATACACATCTGCTGCAAGCTTTGTCTACTGAGGGAGCCATGTCGAGGATATATGTGAAGAATCTCCCTAAATATGTTACGGAGAATCGACTTAGAGATTTATTTTCTCAGAAAGGAGAAATAACCGAGGTCAAGCTTATGCGTTTCAAAAACGGAGAAAGTCGCCAATTTGCCTATATTACATTTCGTACAGACCAGGAAGCTCAGGAAGCAGTCCGACATTTTAATAAATCTCTCCTTGGCGCACGCATAATTACTTGTGAGGTGGTTCGAATGCTCCGTGATGCAAATCTTCCTCGTCGGCGTAGGCATCAACAAAGAGAAGGACAAGTGATCACCCCCCCATAG 375 0.424 MIELDYHCLNTHLLQALSTEGAMSRIYVKNLPKYVTENRLRDLFSQKGEITEVKLMRFKNGESRQFAYITFRTDQEAQEAVRHFNKSLLGARIITCEVVRMLRDANLPRRRRHQQREGQVITPP 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01604 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Trre15g01604 124 PANTHER GEO13361P1-RELATED 22 111 - -
Trre15g01604 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 92 IPR000504 GO:0003723
Trre15g01604 124 Gene3D - 15 120 IPR012677 -
Trre15g01604 124 SMART rrm1_1 25 97 IPR000504 GO:0003723
Trre15g01604 124 SUPERFAMILY RNA-binding domain, RBD 24 114 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01604 Trre-Chr15 12843239 12844276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01604 22 94 Eukaryotic Initiation Factors Gene Family AT2G36660 28.767 2.07e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01604 K14787 - cit:102613427 120.938