Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01603 ATGGCAACATCCCGCCGGTTCGTCTACCCGGGCACCGTGCACTCCTGCTCCAATGGCAATTCTACACAGAAGTCAAAAAGGCTTGAATCTGCTGCTGATGATGACAAAGATAACCGTAGTCCTGCTAGTGAACGTGAAGAAAATTGTGGTAATCACCCTTCTGAAAGAAACCCAAGAAGTGGTGCTCAAGAGTTAGATCTAGAGGGCCAAGAAGATACTTTCGGAGAGAACGTTGCCAATGATAAGTACTCTCAAGTGACTGCAACTGAGGAAGAGGAGAAATCATCAAATCCAAAAGTTAAGAAAGAAGTTTCTGAGTCGTGTCGACTGTTTGTCCGTAATCTGCCATACACAACCACGGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGGGATGTCTTACAGGTTCATTTAGTTGTTGATAAGGAAACAAAACGATCCAAAGGAATAGCTTATATTCATTTCTCAGTTCCAGATTTTGCAGCCAGCCACAACAACTTCCCTAGACTTTAG 516 0.4399 MATSRRFVYPGTVHSCSNGNSTQKSKRLESAADDDKDNRSPASEREENCGNHPSERNPRSGAQELDLEGQEDTFGENVANDKYSQVTATEEEEKSSNPKVKKEVSESCRLFVRNLPYTTTEEELEEHFSQFGDVLQVHLVVDKETKRSKGIAYIHFSVPDFAASHNNFPRL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01603 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 171 IPR000504 GO:0003723
Trre15g01603 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 162 IPR000504 GO:0003723
Trre15g01603 171 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 19 159 - -
Trre15g01603 171 Gene3D - 77 164 IPR012677 -
Trre15g01603 171 MobiDBLite consensus disorder prediction 1 102 - -
Trre15g01603 171 SMART rrm1_1 109 170 IPR000504 GO:0003723
Trre15g01603 171 MobiDBLite consensus disorder prediction 27 66 - -
Trre15g01603 171 MobiDBLite consensus disorder prediction 86 102 - -
Trre15g01603 171 SUPERFAMILY RNA-binding domain, RBD 101 161 IPR035979 GO:0003676
Trre15g01603 171 MobiDBLite consensus disorder prediction 10 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01603 Trre-Chr15 12841047 12842386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01603 101 160 Eukaryotic Initiation Factors Gene Family AT2G36660 36.667 1.37e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01603 K14787 - gmx:100798742 149.058