Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01602 ATGATGTTTGAGAAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCGACAAAAACATTGGCCCTGGTTGTCTTCCTTGAACCAGCAGAAGCTAACGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACATGGAATGGGCTCCTTCCAATGTTCTTAATCCAAAATCAACATCAAAAGATAACGAGATGAATAGTCGAATTGGTGAAAAGGATGTCAAACGACAGATGTTGGAGCAAGACGTGGAAAGAATATCAGATATGGATATTGATCCAGACAGAGTAGAGTCCCGGTCCCTGTTTGTCAAGAACTTAAATTTCAAGACAACAGACGAGGATTTAAGGAAACATTTCAGTGAACACATGAAAGAGGGAAAAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACAAGTGGGACTGTTTTGGACAGTCATGCTCTTATTTTACAACTTTGTCGTGTCAAGAATGACGCGAAAGTACAAAAGAGAGTCGAGAAAGATAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAACATTTAAAATTGCCAATGAAGTTTGGAAATTATAGAAGCTTTGCTTTTGTGGAGTATGTTACCCAGCAGGAGGCACAAAATGCTCTTACAGCTCTCTCAAGCACTCACTTGTATGGCAGACATCTTAATATAGAGAGAGCGAATGAAGAAAAGGATATGTTTGATGAAGAAAACATGAAGTTTAAAAGGTTTGATTAG 861 0.3833 MMFEKFGSLDKIILPSTKTLALVVFLEPAEANAAFRGLAYKRYKDAPLYMEWAPSNVLNPKSTSKDNEMNSRIGEKDVKRQMLEQDVERISDMDIDPDRVESRSLFVKNLNFKTTDEDLRKHFSEHMKEGKILSVKVKKHLKNVSMGFGFVEFDSTETATSGTVLDSHALILQLCRVKNDAKVQKRVEKDKSSTKLLVKNVAFEATKKDLRQLFSPFGQIKHLKLPMKFGNYRSFAFVEYVTQQEAQNALTALSSTHLYGRHLNIERANEEKDMFDEENMKFKRFD 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01602 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 270 IPR000504 GO:0003723
Trre15g01602 286 SMART rrm1_1 195 266 IPR000504 GO:0003723
Trre15g01602 286 SMART rrm1_1 104 173 IPR000504 GO:0003723
Trre15g01602 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 263 IPR000504 GO:0003723
Trre15g01602 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 160 IPR000504 GO:0003723
Trre15g01602 286 SUPERFAMILY RNA-binding domain, RBD 2 69 IPR035979 GO:0003676
Trre15g01602 286 Gene3D - 88 186 IPR012677 -
Trre15g01602 286 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Trre15g01602 286 SUPERFAMILY RNA-binding domain, RBD 87 181 IPR035979 GO:0003676
Trre15g01602 286 CDD RRM6_RBM19_RRM5_MRD1 194 268 - -
Trre15g01602 286 Gene3D - 187 284 IPR012677 -
Trre15g01602 286 Gene3D - 1 81 IPR012677 -
Trre15g01602 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 190 IPR000504 GO:0003723
Trre15g01602 286 PANTHER RNA BINDING PROTEIN 130 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01602 Trre-Chr15 12838524 12840245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01602 96 284 Eukaryotic Initiation Factors Gene Family AT4G34110 26.108 3.46e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01602 K14787 - gmx:100798742 431.024