Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01597 ATGGGATATGGAACAAGAAAACTCTCGGATGAGTATGAAGTTTCGGAGATTCTAGGTAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAAAAAATCAAACAATGAAGATGATGAAAAATCACAATCATCACAAGTAGTAGCAATAAAAACACTTAGAAGGGTAAGTTCTTCAAATAATCCAAGTGGATTACCAAGACCAAAAAAAGATGTTGGAGAAAGAAGTACAATGATGTTTCCGACATTTAGACAAGTTTCGGTTTCGGATGCATTATTAACAAATGAGATACTAGTAATGCGAAGAATAGTCGAAAACGTTTCGCCACATCCAAATGTGATTGATCTTTATGATGTTTATGAGGATATAAATGGTGTTCATCTTGTGCTTGAGCTTTGTTCCGGTGGCGAACTTTTCGATAGGATTGTTGCACAAGATAAGTATAGTGAAACTGAAGCTGCAACTGTGGTTAATCAAATAGCTTCAGGGTTAGAAGCTATTCATAGAGCTAACATTGTTCATAGAGATTTGAAGCCTGAAAATTGTCTTTTTTTAGATGTTAGGAAAGATTCTAGTCTTAAGATTATGGATTTTGGATTAAGTTCTGTTGAAGAGTTTACTGACCCTGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAGAGTGATATGTGGTCTCTTGGAGTTATTCTATATATCTTACTTTCAGGGTATCCACCTTTCATTGCTCAAAATAATCGCCAAAAACAACAAATGATACTTAATGGGAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAATCAGCAAAGAATTTGATCTCAAGTCTTCTAACCGTTGATCCTAGTAAGAGACCTAGTGCTCAAGAGCTTCTAAGTGATCCATGGGTGAAAGGTGAGAAAGCCAAAGATGATCAAATGGACCCTGAAATTGTCTCAAGGTTACAAAGGTTTAATGCAAGACGCAAACTTCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACCATCTTCCTTAGAACCAAAAAATTGAAATCATTGGTTGGATCCTATGATCTCAAAGAAGATGAAATTGAAAATCTCAGGATACATTTCAAGAAAATATGTTCAGATAGAGACAATGCGACTCTACCTGAGTTTGAGGAGGTGTTAAAAGCAATGAATATGCTATCATTGATACCTTTTGCAGCTCGTATATTTGACTTGTTTGATAACAACCGTGATGGAACCGTTGATATGAGAGAGATACTTTGTGGATTTTCTAGTCTTAAGAACTCCAAAGGAGAGGATGCTCTTCGATTATGCTTCCAGATGTATGACACAGATAGATCTGGATGCATCAGCAAGGAAGAAGTAGCATCTATGCTCAGAGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGAAAGTTAGATGAGATTTTTGACTTAATGGATGCCAATAATGATGGAAAAGTTACCTTTGATGAATTCAAAGCTGCTATGCAAAGAGATAGCTCACTTCAAGATGTAGTCCTCTCGTCTCTTCGCGCATAA 1584 0.3662 MGYGTRKLSDEYEVSEILGRGGFSVVRKGTKKSNNEDDEKSQSSQVVAIKTLRRVSSSNNPSGLPRPKKDVGERSTMMFPTFRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDINGVHLVLELCSGGELFDRIVAQDKYSETEAATVVNQIASGLEAIHRANIVHRDLKPENCLFLDVRKDSSLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMILNGNFSFYEKTWKGISQSAKNLISSLLTVDPSKRPSAQELLSDPWVKGEKAKDDQMDPEIVSRLQRFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEDEIENLRIHFKKICSDRDNATLPEFEEVLKAMNMLSLIPFAARIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDEFKAAMQRDSSLQDVVLSSLRA 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01597 527 Pfam EF-hand domain pair 443 512 IPR002048 GO:0005509
Trre15g01597 527 CDD STKc_CAMK 12 309 - -
Trre15g01597 527 SMART serkin_6 12 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01597 527 CDD EFh 445 512 IPR002048 GO:0005509
Trre15g01597 527 Gene3D Transferase(Phosphotransferase) domain 1 137 329 - -
Trre15g01597 527 ProSiteProfiles EF-hand calcium-binding domain profile. 404 439 IPR002048 GO:0005509
Trre15g01597 527 ProSiteProfiles Protein kinase domain profile. 12 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01597 527 ProSitePatterns EF-hand calcium-binding domain. 453 465 IPR018247 -
Trre15g01597 527 MobiDBLite consensus disorder prediction 26 46 - -
Trre15g01597 527 Gene3D Phosphorylase Kinase; domain 1 79 136 - -
Trre15g01597 527 Gene3D - 330 522 - -
Trre15g01597 527 ProSitePatterns Protein kinases ATP-binding region signature. 18 50 IPR017441 GO:0005524
Trre15g01597 527 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 353 522 - -
Trre15g01597 527 Gene3D Phosphorylase Kinase; domain 1 7 37 - -
Trre15g01597 527 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Trre15g01597 527 PRINTS Recoverin family signature 436 455 - -
Trre15g01597 527 PRINTS Recoverin family signature 412 433 - -
Trre15g01597 527 PRINTS Recoverin family signature 502 522 - -
Trre15g01597 527 Pfam EF hand 412 428 IPR002048 GO:0005509
Trre15g01597 527 Pfam Protein kinase domain 93 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g01597 527 SUPERFAMILY Protein kinase-like (PK-like) 7 328 IPR011009 -
Trre15g01597 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Trre15g01597 527 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 133 - -
Trre15g01597 527 ProSiteProfiles EF-hand calcium-binding domain profile. 440 475 IPR002048 GO:0005509
Trre15g01597 527 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Trre15g01597 527 ProSitePatterns EF-hand calcium-binding domain. 417 429 IPR018247 -
Trre15g01597 527 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 137 327 - -
Trre15g01597 527 CDD EFh 411 470 IPR002048 GO:0005509
Trre15g01597 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 491 - -
Trre15g01597 527 SUPERFAMILY EF-hand 354 518 IPR011992 -
Trre15g01597 527 SMART efh_1 486 514 IPR002048 GO:0005509
Trre15g01597 527 SMART efh_1 408 436 IPR002048 GO:0005509
Trre15g01597 527 SMART efh_1 444 472 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01597 Trre-Chr15 12814594 12819298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01597 91 515 EF-hand Containing Proteins AT3G10660 36.842 2.11e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Trre15g01597 Pkinase 2.5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01597 K13412 - gmx:732616 878.241