Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01589 ATGGTGGGTTCTAGAGTCTTACAAGGAAAATCACTGGAAGAATTCAATGAAGGGATTGGTTATATTCTGAATCAATGGTTTGCTCTCCAAATTGCCATCGATTATGAGATGGGTGACAATAACTCTCACCCCAAAGTTGAAAAACTCATCGCCGACGTGCGTTCTTGGTTTGCACAATCTGAAGAGCCATATCGTATTGATGAATTGACAATCTTAATCAAGGAAGGCATGAATGCTGCTTTCGATCCAATGATTCATGATGACTGCAAACTTGAAAAGTATGAGAATATCAAGCTTCTTAGAGAGCAGCAAAGGGAAGTGAAGCAAGGGGAAATGAACGATCTTCTACTGCATGCATCAGAATGTCGTGCTGCACGTTGCCGATTTCCTAATTGTTTCAAAGTGAAGGGCCTCTTTCGCCATGGTATGCGCTGCAGCACACGTGCTTCCGGAGGCTGCGATCTTTGCAAGAAAATGTGGTTTTTGTTGCAATTGCATGCTTGTGCATGCAACAAAGCAGAGTGCAACTTGCCACGATGCAGTGATATCAAAGAACATCTAGGGAGGCTGCAACAACCTAATGGAAATGATGAGGCATAA 600 0.43 MVGSRVLQGKSLEEFNEGIGYILNQWFALQIAIDYEMGDNNSHPKVEKLIADVRSWFAQSEEPYRIDELTILIKEGMNAAFDPMIHDDCKLEKYENIKLLREQQREVKQGEMNDLLLHASECRAARCRFPNCFKVKGLFRHGMRCSTRASGGCDLCKKMWFLLQLHACACNKAECNLPRCSDIKEHLGRLQQPNGNDEA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01589 199 Pfam Pre-rRNA-processing protein TSR2 15 91 IPR019398 -
Trre15g01589 199 SUPERFAMILY TAZ domain 102 185 IPR035898 -
Trre15g01589 199 Pfam TAZ zinc finger 113 180 IPR000197 -
Trre15g01589 199 PANTHER CBP/P300-RELATED 91 192 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre15g01589 199 ProSiteProfiles Zinc finger TAZ-type profile. 101 183 IPR000197 -
Trre15g01589 199 Gene3D TAZ domain 87 199 IPR035898 -
Trre15g01589 199 SMART TAZ_2 103 181 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01589 Trre-Chr15 12759798 12762992 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Trre15g01589 WGG 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01589 K04498 - tpra:123894519 161.384