Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01585 ATGTCAACCACATCAACATCCTTCATAGTCCCTTTTCTTTGCATTTTCCTTCTTTTACCCTTACTCCTCCTAGCTCAAGCACCTTCTCCATCTCCTTCTCCTTCTACTTCTACTTCTACCTCAAAAGCATGCAAATCAACATTATATCCAAAACTATGCCGTTCGATTCTCTCCTCCATTCGATCGTCACCAACCGATCCCTACCACTTAGGAAAATTCTCAATAAAACAAAGCCTAAAACAAGCCAAAAAACTATCCAAAGTATTCAAAGACTTTCTCAAAAAACACCACCAATCATCTCTTAACCAAGCCGAAATCGCCGCACTAGACGATTGTAGCGAACTAAACCAACTCAATGTAGACTACTTAGAGTTAGTTAGAGATGTACTAAAATCAGCAGATTCATCATCTTTCAATAACACCGATGTGTTGGTGGAAAATGTTGAAACTTATCTTAGTGCTGTTGCTACTAACCATTATACTTGTTATGATGGATTGGTTGTGACTAAAAGTGACATTGCTAATTTTCTTGCTGTTCCTTTGAGTAATGTTACAAAATTGTATAGCATTTCACTTGGTTTGGCTACACAAGCTTTGAATAAAAATATAAAGAAACATAAGACTCGTAAACATGGTCTTCCTACTAAGACTTTTAAGGTCAGACAGCCACTTAAAAAGCTCATTAAGCTTCTTCGAACAAAATTCAGTTGCAATAAATCATCAAACTGTACAAGAACAGAAAGGATTCTTCAAGAAAGTGAAAACAAAGGAATTCTACTGAAAGAATTTGTTATTGTGAGTCTTGATGGAACAGAAAACTTCACTTCAATTGGAGAAGCTATTGATTCTGTACCTGATGATTTAAAAGCAGAAGATGGCTATTTTCTTATCTATGCTAAAGAAGGATTATATGAGGAATATATCACCATTCCAAAACAAAAGAAGAATATTTTGCTTATTGGTGATGGAATTGATAAGACTTGTATCACTGGAAATCATAGTGTTGTAGATGGTTGGACAACTTTTAATTCTTCAACCTTTGCTGTGGCTGGAGAAAGATTTATAGCAGTAGACATAACATTCAGAAACACAGCAGGACCAGAAAAGCACCAGGCAGTAGCAGTAAGAAACAATGCAGATCTTTCCATATTCTACCGTTGTAGTTTTGAAGGATACCAAGACACACTCTATGTTCACTCTCTTAGACAATTCTATAAACAATGTGATATCTATGGCACAGTTGATTTCATTTTCGGTAACGCCGCTGCAGTACTTCAAAGTTGTAACATCTATGCTAGAAAACCAATGGCAAATCAAAAAAATGCTGTAACAGCACAAGGTAGAACTGATCCAAATCAAAACACAGGAATCTCAATACAAGATTGTAGGATTGATGCTGCACAAGACTTAGCTGAAGATAAGAATGTTACTAAAAATTACTTAGGAAGACCATGGAAACTTTATTCAAGAACTGTTTATTTACAATCATATATTGGTGATTTGATTCAACCTTCTGGATGGTTAGAGTGGAATGGAACAGTTGGATTAGATACACTTTTTTATGGTGAATTTGATAATTTTGGACCTGGTGCTATAACTAATAAGAGGGTTCAATGGCATGGTTATAATTTGATGACTCCTTCTCAAGCTTGGAATTTCACTGTCCTAAATTTTACTTTAGGGAATACTTGGATTCCTGATACAGATGTACCTTATACTGAAGGACTGCATGATAATTGA 1740 0.3546 MSTTSTSFIVPFLCIFLLLPLLLLAQAPSPSPSPSTSTSTSKACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFKDFLKKHHQSSLNQAEIAALDDCSELNQLNVDYLELVRDVLKSADSSSFNNTDVLVENVETYLSAVATNHYTCYDGLVVTKSDIANFLAVPLSNVTKLYSISLGLATQALNKNIKKHKTRKHGLPTKTFKVRQPLKKLIKLLRTKFSCNKSSNCTRTERILQESENKGILLKEFVIVSLDGTENFTSIGEAIDSVPDDLKAEDGYFLIYAKEGLYEEYITIPKQKKNILLIGDGIDKTCITGNHSVVDGWTTFNSSTFAVAGERFIAVDITFRNTAGPEKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYKQCDIYGTVDFIFGNAAAVLQSCNIYARKPMANQKNAVTAQGRTDPNQNTGISIQDCRIDAAQDLAEDKNVTKNYLGRPWKLYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFDNFGPGAITNKRVQWHGYNLMTPSQAWNFTVLNFTLGNTWIPDTDVPYTEGLHDN 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01585 579 CDD PMEI-like_3 43 205 - -
Trre15g01585 579 SMART PMEI_2 35 194 IPR006501 GO:0004857
Trre15g01585 579 FunFam Pectinesterase 258 576 - -
Trre15g01585 579 SUPERFAMILY Pectin lyase-like 261 575 IPR011050 -
Trre15g01585 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 197 IPR035513 -
Trre15g01585 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 198 IPR035513 -
Trre15g01585 579 Pfam Plant invertase/pectin methylesterase inhibitor 41 193 IPR006501 GO:0004857
Trre15g01585 579 Pfam Pectinesterase 264 561 IPR000070 GO:0030599|GO:0042545
Trre15g01585 579 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
Trre15g01585 579 Gene3D - 259 576 IPR012334 -
Trre15g01585 579 NCBIfam pectinesterase inhibitor domain 15 197 IPR006501 GO:0004857
Trre15g01585 579 PANTHER PECTINESTERASE 22 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01585 Trre-Chr15 12732056 12736662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01585 43 576 Carbohydrate Esterase AT3G10720 60.332 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01585 K01051 - gmx:100808277 868.996