Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g01584 ATGTCTTCTTTTAAGGCCTATGGTAAAGTCGATGAATCCGAGCATGCCCTATTCGAAGTTCGAAGGAAATCTCGAAAGCGTATAACAATCATAAGCTTGTCCACAATTGTCCTAGTCGGTATTGTATTTGCAGCGGTTTTCGGAACCATTGCTCACAACAATGCTCATAATAACAACGACAACAACACCAACAATGACCAATCTCTTTCGAGTTCGGTGAAGGCTATTTGTGATATTACATTGTACAAGGATTCATGTGAAAGCAGCCTTAGTCCACTTGTTCAATCGGGTCAACAAATTCGACCCGAGGATTTGTTCAAGTTGTCAATTCAAGTTGCATTAAATGCGGTTTCGAAAGGTGTTCAGTATTTTTCTGAGCATGGAACTTTCGATGACTTGAATTTGAATGTTGATAATAGAACAAAGGAAGCTTTGATGAACTGTAAGGATCTTTTGGATCTTACTATTGATCATTTGAATAGTTCTTTGTCTTATGGGGGGAAATCTTCTTTGATTGATGTTTTGGAGGACCTTGAAACTTGGTTGAGTGCTTCAGGTACTTACCAGCAAACATGCATTGATGGTTTAGAAGAGGCAGAAGAAGCATTAAAGTCAAGTATTACAACCAATCTCAAAAACTCTACAGAATTCACAAGCAACAGTCTTGCAATCATTACATGGCTTAACAAGGCTGCAAATTCGGTCAACTTTAGACGCTTATTGAGTTTGTCTCATCAAAATGAAGAACCAAATTGGCTTCATCCTAATGACAGAAAGTTACTTCAAAAAGACACTGATTTGAAGAAGAAAGCCGACATTGTTGTCGCGAAAGACGGAAGTGGAAAATATAAAACAATTTCAGCTGCATTGAAACATGTCCCTGATAAAAGTGACAAGAGGACTGTGATTTATGTGAAGAATGGAACTTATTATGAAAATGTTAGGGTGGAAAAGACTAAATGGAATGTCATGATTATTGGTGATGGTATGAATGTTACTACTGTTTCTGGAAGTCTAAATTTTGGAGATGGTACACCAACATTTTCAACTGCAACATTTGCTGTTTTTGGGAAGAATTTCATTGCTAGGGACATAGGCTTTAAGAACACAGCTGGTCCACAAAAACACCAAGCAGTAGCACTAATGACAAGTGCAGACCAAGCAGTTTTCTACAAATGTTCCATAGATGCATATCAAGACACACTCTACGCTCACTCGAATCGCCAATTCTACCGCGAATGCAACATCTACGGAACAGTCGATTTCATTTTCGGTAACTCAGCCGTTGTCTTACAAAACTGCAACATTTTACCAAGACAACCTATGCAAGGACAACAGAACACAATAACAGCACAAGGCAAAACTGATCCTAACATGAACACAGGAATTTCAATTCAAAATTGCAATGTTTCGCCATTCGGGAACTTGAGTTCTGTTAAAACATATTTAGGAAGACCTTGGAAGAATTACTCGACGACGGTGTTTATGCAATCTACATTAGGAGATTTTATTAGTCCAAATGGTTGGTTACCTTGGGTTGGAGATTCTGCACCAGATACTATATTCTATGCTGAATTTCAAAATGTTGGAAAAGGTTCTTCAACAAATAATAGGGTGAAGTGGAAAGGTGTGAAAAATATTACAAATAAAGAAGCTAAGAAGTTTACAGTTAAGGCTTTTCTTTCTGGTGATAAATGGATTCCAGCTTCTGGTGCTACATTTAAATCATCACTTTAA 1737 0.3759 MSSFKAYGKVDESEHALFEVRRKSRKRITIISLSTIVLVGIVFAAVFGTIAHNNAHNNNDNNTNNDQSLSSSVKAICDITLYKDSCESSLSPLVQSGQQIRPEDLFKLSIQVALNAVSKGVQYFSEHGTFDDLNLNVDNRTKEALMNCKDLLDLTIDHLNSSLSYGGKSSLIDVLEDLETWLSASGTYQQTCIDGLEEAEEALKSSITTNLKNSTEFTSNSLAIITWLNKAANSVNFRRLLSLSHQNEEPNWLHPNDRKLLQKDTDLKKKADIVVAKDGSGKYKTISAALKHVPDKSDKRTVIYVKNGTYYENVRVEKTKWNVMIIGDGMNVTTVSGSLNFGDGTPTFSTATFAVFGKNFIARDIGFKNTAGPQKHQAVALMTSADQAVFYKCSIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVLQNCNILPRQPMQGQQNTITAQGKTDPNMNTGISIQNCNVSPFGNLSSVKTYLGRPWKNYSTTVFMQSTLGDFISPNGWLPWVGDSAPDTIFYAEFQNVGKGSSTNNRVKWKGVKNITNKEAKKFTVKAFLSGDKWIPASGATFKSSL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g01584 578 CDD PMEI-like_3 75 230 - -
Trre15g01584 578 Pfam Plant invertase/pectin methylesterase inhibitor 72 224 IPR006501 GO:0004857
Trre15g01584 578 FunFam Pectinesterase 266 578 - -
Trre15g01584 578 NCBIfam pectinesterase inhibitor domain 66 228 IPR006501 GO:0004857
Trre15g01584 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 228 IPR035513 -
Trre15g01584 578 FunFam Pectinesterase 69 229 - -
Trre15g01584 578 Pfam Pectinesterase 272 564 IPR000070 GO:0030599|GO:0042545
Trre15g01584 578 SUPERFAMILY Pectin lyase-like 270 574 IPR011050 -
Trre15g01584 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 230 IPR035513 -
Trre15g01584 578 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Trre15g01584 578 PANTHER PECTINESTERASE 37 568 - -
Trre15g01584 578 SMART PMEI_2 68 224 IPR006501 GO:0004857
Trre15g01584 578 Gene3D - 267 578 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g01584 Trre-Chr15 12727523 12731188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g01584 1 578 Carbohydrate Esterase AT3G10710 57.414 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g01584 - - gmx:100808802 899.427