LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g01577	ATGCCTATCTTTGTTCTGCATCAAGGGATATGGCCAGAGTCTCCAAGTTTCAGAGATGAGGGTATAGGGAAGATTCCTTCAAGATGGAAAGGAGTTTGCATGGAGGGTCATGATTTCAAGAAATCTAATTGCAATAGAAAATTGATAGGTGCAAGATACTATGGTAAAAAAGATCCCAAGGGTTCACCAAGAGATTTTAATGGACATGGGAGCCACACTGCATCAACAGCAGCTGGTGCCATTGTAAACAATGCAAGTTATTTTGGTTTAGCAAAAGGAACAGCAAGAGGTGGTTCACCTTCTGCAAGGATTGCTGCCTATAAAGCATGCACAGAAAAAGGTTGCTCTGGTGGAACATTATTGAAGGCTATTGATGATGCTATCAAGGATGGAGTAGATATAATCTCAATCTCTATTGGATTTAGCTCAGAATTTCTATCAGAATATTTGAGTGATCCAATAGCTATTGGAGCATTTCATGCAGAACAAAGAGGGGTTATGGTTGTTTGTTCAGCTGGGAATGATGGTCCTGATCCTTCCACTGTTGTTAACACAGCACCATGGATATTTACAGTTGCAGCTTCTAATATTGATAGGAACTTTCAGTCAAGTGTTGTTCTTGGAAATGGGAAAAGTTTCAAAGGAACCGGCATTAACTTCTCTAACCTTACACGCTCAACGATGCATTCTCTTGTCTTCGGAGAGGAAGTTGCAGCCAAATTTACATCAAAAACAGAAGCTAGGAACTGTTATCCCGGATCACTAGATAACAAAAAAGTTGCAGGAAAGATTGTTATTTGTGTTAACGATGATCGAAATATCACACGGAATTTGAAGAAGTTAATTGTACAAGATGCGGGAGCCATAGGGATGATACTCATTGAGAAGGAAAACATAGATGTTTCCTTTGATGCCGGTCTATTTCCCTTCACAGAAGTTGGCAATCTTGAAGGGTATCAAATCCTTAAGTACCTAAAATCTACCAAGAAACCAACTGCAACAATTCTTCCAACAACGGAAGTTCCTAGATATCGGCCAGCACCAATTGTTGCATCTTTCTCATCCAGAGGTCCTTCAAGCCTTACTGAAAACATTCTCAAGCCGGATGTCATGGCACCAGGCGTTTCGATATTGGCTGCTTTGATTCCTAAAAAAGAAAATGTTCCAATTGGGAAAAAACCATCCATGTTTGCCTTAAGATCTGGTACATCTATGGCTTGCCCTCATGTGACAGGTGCTGCAGCATTCATCAAATCAGTACATGGAAGTTGGAGTCCTTCAATGATCAAATCAGCATTAATGACAACAGCTACAACCTACAATAACATGAGGAAGCAAGTGACCAATAGCTCAAACTACATTGCCAACCCACACGAAATGGGAGTCGGAGAAATCAATCCACTCAAAGCTCTTAACCCTGGTTTAGTCTTCGAAACAGATATCGAAGACCACATTAAATTCCTTTGTTATTTTGGCTATTCAAACAAAGACATAAGAAAAATGTCTAAAACCAATGTCACATGCCCAAGGACCTCACAAAGTCTTATATCAAACATCAATTACCCATCAATCTCTATACAAAAACTTAAAAGAAAACAGAAAGCAAAAGTGATCACAAGAACAGTAACCAATGTAGGAACCTTGAATGCTACATATGTTGCAAAAGTGCATGCACCTGAAGGATTGATTGTCAAGGTCATTCCCAACAAACTTGTATTTTCAAAGAGTGTTCAAAGAATCACCTATAAAGTCTCATTCTATGCCAAAGAAGCTCATGGTGGATACAATTTTGGGTCTCTAACATGGCTTGATGGTCGACATTATGTTCACACAGTATTTGCAGTCCAAGTTGAATAA	1857	0.3936	MPIFVLHQGIWPESPSFRDEGIGKIPSRWKGVCMEGHDFKKSNCNRKLIGARYYGKKDPKGSPRDFNGHGSHTASTAAGAIVNNASYFGLAKGTARGGSPSARIAAYKACTEKGCSGGTLLKAIDDAIKDGVDIISISIGFSSEFLSEYLSDPIAIGAFHAEQRGVMVVCSAGNDGPDPSTVVNTAPWIFTVAASNIDRNFQSSVVLGNGKSFKGTGINFSNLTRSTMHSLVFGEEVAAKFTSKTEARNCYPGSLDNKKVAGKIVICVNDDRNITRNLKKLIVQDAGAIGMILIEKENIDVSFDAGLFPFTEVGNLEGYQILKYLKSTKKPTATILPTTEVPRYRPAPIVASFSSRGPSSLTENILKPDVMAPGVSILAALIPKKENVPIGKKPSMFALRSGTSMACPHVTGAAAFIKSVHGSWSPSMIKSALMTTATTYNNMRKQVTNSSNYIANPHEMGVGEINPLKALNPGLVFETDIEDHIKFLCYFGYSNKDIRKMSKTNVTCPRTSQSLISNINYPSISIQKLKRKQKAKVITRTVTNVGTLNATYVAKVHAPEGLIVKVIPNKLVFSKSVQRITYKVSFYAKEAHGGYNFGSLTWLDGRHYVHTVFAVQVE	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g01577	618	SUPERFAMILY	Subtilisin-like	5	475	IPR036852	GO:0004252\|GO:0006508
	Trre15g01577	618	CDD	Peptidases_S8_3	5	438	IPR034197	-
	Trre15g01577	618	ProSitePatterns	Serine proteases, subtilase family, serine active site.	402	412	IPR023828	-
	Trre15g01577	618	Gene3D	Peptidase S8/S53 domain	5	483	IPR036852	GO:0004252\|GO:0006508
	Trre15g01577	618	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	5	611	IPR045051	-
	Trre15g01577	618	Pfam	Fibronectin type-III domain	518	615	IPR041469	-
	Trre15g01577	618	Gene3D	-	198	342	-	-
	Trre15g01577	618	Pfam	PA domain	248	298	IPR003137	-
	Trre15g01577	618	FunFam	subtilisin-like protease SBT1.5	198	341	-	-
	Trre15g01577	618	Pfam	Subtilase family	54	442	IPR000209	GO:0006508\|GO:0008236
	Trre15g01577	618	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	471	-	-
	Trre15g01577	618	CDD	PA_subtilisin_like	204	335	-	-
	Trre15g01577	618	Gene3D	-	488	617	-	-
	Trre15g01577	618	PRINTS	Subtilisin serine protease family (S8) signature	401	417	IPR015500	-
	Trre15g01577	618	PRINTS	Subtilisin serine protease family (S8) signature	65	78	IPR015500	-
	Trre15g01577	618	FunFam	Subtilisin-like protease SBT1.5	2	222	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g01577	Trre-Chr15	12648059	12652095	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g01577	3	615	Subtilisin-like Serine Gene Family	AT1G20150	45.253	0.0	536

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g01577	K25898		-	gmx:100809885	961.829